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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KRLIVESPNVKLEDGVLESRFTYRKNHFEHRADGLHVTPKEHDYSFKTVLKPRKTGLLLVGLGGNNGSTAVGSIFANQYA
MTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIFVPFKDIVPILSPNDLIISGWDISDSNLYEAMGRAKVFEPELQE
KLRPFMEPIVPLPSIYYPDFIASNQGDRANNVIPGDNKLEHLEHIRADIRKFKQEHELECVIVLWTANTERYTDVRQGLN
ATADEIMESIRVNEDEVSPSNIFAVASILEGAHYINGSPQNTLVPGLIELAERHKVFVGGDDFKSGQTKFKSAFVDFLVS
SGMKPESIVSYNHLGNNDGKNLSEARQFRSKEISKSSVVDDMVKSNQILFPDAKNPDYCVVIKYVPYVADSKRAMDEYIC
SIFMGGKQTFVVHNTCEDSLLASPLIYDLAILTELASRVSYKVDDEYKPFHSVLSILSLLLKAPVVPPGTPISNAFMRQF
STLTKLVTALAGFPSDTDMQIEFFTQLPAAK

The query sequence (length=511) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1vko:A 511 511 1.0000 1.0000 1.0000 0.0
2 9f2k:A 513 506 0.5479 0.5458 0.5534 0.0
3 1jki:A 525 509 0.5108 0.4971 0.5128 0.0 1jki:B, 1la2:A, 1la2:B, 1la2:C, 1la2:D, 1p1h:A, 1p1h:C, 1p1i:A, 1p1j:A, 1p1j:B, 1p1k:A, 1p1k:B, 1rm0:A, 1rm0:B
4 1p1i:B 498 509 0.4697 0.4819 0.4715 6.74e-160 1p1h:B, 1p1h:D
5 1jkf:A 466 507 0.4188 0.4592 0.4221 1.01e-127 1jkf:B
6 7nwr:B 426 381 0.2329 0.2793 0.3123 4.83e-47 7nwr:A
7 3qvs:A 392 233 0.1311 0.1709 0.2876 1.27e-16 3qvt:A, 3qvw:A, 3qvx:A, 3qw2:A, 3qw2:B, 3qw2:C, 3qw2:D, 1u1i:A, 1u1i:B, 1u1i:C, 1u1i:D
8 3cin:A 382 263 0.1292 0.1728 0.2510 5.25e-08
9 6k96:B 343 171 0.0841 0.1254 0.2515 0.077 6k96:A
10 7d1b:A 302 64 0.0391 0.0662 0.3125 1.2
11 2xig:C 150 78 0.0431 0.1467 0.2821 4.1 2xig:A, 2xig:B, 2xig:D
12 3ddd:A 281 113 0.0450 0.0819 0.2035 6.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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