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BioLiP
>protein
KRLFVVKPSLYYDARFLRLMKFYLMLTGIPVIIGITLVNIFIGEAELAEIPEGYIPEHWEYYKHPISRWIARNFYDGPEK
NYEKTLAILQIESEKAELRLKEQEVRRLMRARGDGPWYQFPTPEKEFIDHSPKATPDN

The query sequence (length=138) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8iaq:h 138 138 1.0000 1.0000 1.0000 3.28e-100 8ib6:h, 8ibb:h, 8ibf:h, 8ic4:h
2 7v2d:a 140 138 0.8261 0.8143 0.8261 4.59e-86 5lnk:W, 7r41:h, 7r42:h, 7r44:h, 7r45:h, 7r47:h, 7r48:h, 7r4c:h, 7r4d:h, 7r4g:h, 8ud1:1h, 8ugh:1h, 8ugi:1h, 8ugj:1h, 8ugn:1h, 8ugn:5h, 8ugr:1h, 7v2e:a, 7v2f:a, 7v2h:a, 7v2k:a, 7v2r:a, 7v30:a, 7v31:a, 7v32:a, 7v33:a, 7v3m:a, 7vbl:a, 7vbp:a, 7vc0:a, 7vwl:a, 7vxs:a, 7vy1:a, 7vye:a, 7vyg:a, 7vyi:a, 7vys:a, 7vz8:a, 7vzv:a, 7vzw:a, 7w0h:a, 7w0r:a, 7w0y:a, 7w1o:a, 7w1p:a, 7w1t:a, 7w1u:a, 7w1v:a, 7w1z:a, 7w20:a, 7w2l:a, 7w2r:a, 7w2u:a, 7w2y:a, 7w4c:a, 7w4d:a, 7w4e:a, 7w4f:a, 7w4k:a, 7w4l:a, 7w4m:a, 6zkm:W, 6zkn:W, 6zku:W, 6zkv:W
3 5xtc:a 138 138 0.7681 0.7681 0.7681 3.05e-79 5xtd:a, 5xth:a, 5xti:a, 5xti:Ba
4 7v2c:m 175 118 0.2174 0.1714 0.2542 0.060 7v2e:m, 7v2h:m, 7v2r:m, 7v33:m, 7vbl:m, 7vc0:m, 7vxs:m, 7vy9:m, 7vys:m, 7vzv:m, 7vzw:m, 7w0r:m, 7w0y:m, 7w1t:m, 7w1v:m, 7w1z:m, 7w20:m, 7w2r:m, 7w2u:m, 7w2y:m, 7w4c:m, 7w4d:m, 7w4e:m, 7w4f:m, 7w4g:m
5 1hwp:A 252 70 0.1594 0.0873 0.3143 0.14
6 5lnk:J 175 118 0.2174 0.1714 0.2542 0.28
7 8qlp:E 419 53 0.1304 0.0430 0.3396 1.7 8qlp:A, 8qlp:I, 8qlp:M
8 1ct9:A 497 28 0.0870 0.0241 0.4286 2.1 1ct9:B, 1ct9:C, 1ct9:D
9 8isz:B 450 47 0.1014 0.0311 0.2979 4.9 8ifk:A, 8ifl:A, 8ifl:F, 8ifl:J, 8ifl:N, 8ifm:A, 8ifm:F, 8ifm:J, 8ifm:N, 8it0:B, 8it0:F, 8it1:J, 8it1:N, 8it1:B, 8it1:F, 8j8h:B, 8j9g:B, 8j9p:B, 8j9p:D, 8jay:B, 8jay:D, 8jay:J, 8jay:N, 8k9g:B, 8k9g:F, 8u72:B, 8u72:D, 8u72:H, 8u72:F, 8u7b:B
10 7k1n:A 3634 78 0.1522 0.0058 0.2692 5.6 7z88:A
11 5fmf:X 63 21 0.0507 0.1111 0.3333 5.7
12 7k0y:A 3669 78 0.1522 0.0057 0.2692 5.7
13 3gyr:A 587 29 0.0797 0.0187 0.3793 7.4 3gyr:B, 3gyr:C, 3gyr:D, 3gyr:E, 3gyr:F, 3gyr:G, 3gyr:H, 3gyr:I, 3gyr:J, 3gyr:K, 3gyr:L
14 3j6q:A 1058 17 0.0652 0.0085 0.5294 9.0 3j6q:B, 3j6q:C, 3j6q:D, 3j6q:E, 3jay:A, 3jb0:A, 3jb1:A, 3jb2:A, 3jb3:A, 7whp:A, 7whp:B
15 7q0m:A 482 32 0.0797 0.0228 0.3438 9.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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