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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KRKTVKAVIYRFLRLHSGLWLRRKAGYKKKLWKKTAARKRRLREFVFCNKTQSKLLDKMT

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7a5f:33 95 60 0.9167 0.5789 0.9167 8.70e-33 7a5g:33, 7a5h:3, 7a5i:33, 7a5j:3, 7a5k:33, 5aj4:B8, 8any:3, 4ce4:8, 6gaw:B8, 6gb2:B8, 6i9r:3, 3j7y:3, 3j9m:3, 8k2a:Li, 8k2b:Li, 7l08:3, 7l20:3, 7nqh:B8, 7nql:B8, 7nsh:B8, 7nsi:B8, 7nsj:B8, 6nu2:3, 6nu3:3, 7o9k:3, 7o9m:3, 7odr:3, 7ods:3, 7odt:3, 7of0:3, 7of2:3, 7of3:3, 7of4:3, 7of5:3, 7of6:3, 7of7:3, 7og4:3, 7oi7:3, 7oi8:3, 7oi9:3, 7oia:3, 7oib:3, 7oic:3, 7oid:3, 7oie:3, 8oin:BK, 8oiq:BK, 8oir:BK, 8oit:BK, 5ool:3, 5oom:3, 7pd3:3, 8pk0:3, 7po4:3, 7qh6:3, 7qh7:3, 7qi4:3, 7qi5:3, 7qi6:3, 8qsj:3, 8qu1:3, 8qu5:3, 4v19:8, 6vlz:3, 6vmi:3, 8xt0:Li, 8xt1:Li, 8xt2:Li, 8xt3:Li, 6ydp:B8, 6ydw:B8, 6zm5:3, 6zm6:3, 6zs9:3, 6zsa:3, 6zsb:3, 6zsc:3, 6zsd:3, 6zse:3, 6zsg:3
2 6eri:Ad 72 52 0.3167 0.2639 0.3654 0.39 5h1s:e, 5mlc:5, 5mmi:4, 5mmm:4, 4v61:B5, 5x8p:4, 5x8t:4
3 8cja:A 669 38 0.2000 0.0179 0.3158 0.50 8cjb:A, 8cjc:A, 8cmw:A, 7zkj:A, 7zkk:A, 7zkv:A
4 7f0d:3 62 54 0.3333 0.3226 0.3704 0.85 7kgb:3, 7msc:3, 7msh:3, 7msm:3, 7msz:3, 7mt2:3, 7mt3:3, 7mt7:3, 7sfr:3, 5v7q:3, 5v93:3
5 5mq6:A 636 32 0.2000 0.0189 0.3750 1.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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