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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEINVPVYAGMPQPIMRQQIVADNIH
GDTGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFTPS
AEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENYGLAGGPVHDAT
CIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTKVGITIDTDWFWGLVEECVRGYI

The query sequence (length=308) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3mkm:A 311 308 1.0000 0.9904 1.0000 0.0 3b9x:A, 3b9x:B, 3b9x:D, 3mkm:B, 3mkm:C, 3mkm:D, 3mkn:A, 3mkn:B, 3mkn:C, 3mkn:D, 1q8f:A, 1q8f:B, 1q8f:C, 1q8f:D
2 3b9x:C 283 307 0.9188 1.0000 0.9218 0.0
3 6ba0:A 312 306 0.4383 0.4327 0.4412 1.23e-83 6ba0:B, 6ba0:C, 6ba0:D
4 3g5i:A 305 305 0.3961 0.4000 0.4000 1.39e-74 3g5i:B, 3g5i:C, 3g5i:D, 1yoe:A
5 1ezr:A 312 302 0.4123 0.4071 0.4205 2.22e-71 8ctm:A, 8ctm:B, 8ctm:C, 8ctm:D, 1ezr:B, 1ezr:C, 1ezr:D
6 2mas:A 313 303 0.3994 0.3930 0.4059 3.17e-71 2mas:B, 2mas:C, 2mas:D
7 5tsq:A 312 303 0.4026 0.3974 0.4092 1.75e-67
8 4wr2:A 308 306 0.3831 0.3831 0.3856 1.41e-66
9 8qnd:A 297 307 0.3669 0.3805 0.3681 8.37e-56 8qnd:C, 8qnd:B, 8qnd:D
10 4kpo:A 317 281 0.3214 0.3123 0.3523 1.23e-49 4kpo:B, 6zk5:A, 6zk5:B
11 6ba1:A 316 304 0.3409 0.3323 0.3454 2.12e-44 6ba1:B, 6ba1:C, 6ba1:D, 6ba1:E, 6ba1:F, 6ba1:G, 6ba1:H, 6ba1:I, 6ba1:J, 6ba1:K, 6ba1:L, 6ba1:M, 6ba1:N, 6ba1:O, 6ba1:P, 6ba1:Q, 6ba1:R
12 6zk3:A 319 280 0.2792 0.2696 0.3071 2.40e-43 6zk1:A, 6zk1:B, 6zk1:C, 6zk1:D, 6zk2:A, 6zk2:B, 6zk2:C, 6zk2:D, 6zk3:B, 6zk3:C, 6zk3:D, 6zk3:E, 6zk3:F, 6zk4:A, 6zk4:B, 6zk4:C, 6zk4:D
13 4kpn:A 318 313 0.3019 0.2925 0.2971 3.52e-38 4kpn:B, 4kpn:C, 4kpn:D, 4kpn:E, 4kpn:F, 4kpn:G, 4kpn:H
14 8rih:B 333 330 0.3247 0.3003 0.3030 7.13e-38 8rih:A
15 3t8i:A 306 185 0.2078 0.2092 0.3459 6.52e-37 3t8i:B, 3t8i:C, 3t8i:D
16 8oi7:A 346 310 0.3019 0.2688 0.3000 3.07e-36 8oi7:B, 8oi9:A, 8oi9:B, 8oia:A, 8oia:B, 8oia:C, 8oia:D, 8oib:A, 8oib:B, 8oib:C, 8oib:D, 8oic:A, 8oic:B, 8oic:C, 8oic:D, 8oic:E, 8oic:F, 8oic:G, 8oic:H
17 8db6:B 304 183 0.2045 0.2072 0.3443 3.11e-26 8db6:A, 8db6:C, 8db6:D, 8db7:B, 8db7:A, 8db7:C, 8db7:D, 8db8:B, 8db8:A, 8db8:C, 8db8:D, 8db9:A, 8db9:B, 8db9:C, 8db9:D
18 5mj7:A 322 294 0.2695 0.2578 0.2823 1.55e-21 5mj7:B
19 3fz0:B 338 324 0.2890 0.2633 0.2747 4.28e-20 3fz0:A, 3fz0:C, 3fz0:D
20 4i72:A 328 299 0.2500 0.2348 0.2575 2.00e-13 4i70:A, 4i71:A, 4i72:B, 4i73:A, 4i73:B, 4i73:C, 4i73:D, 4i74:A, 4i75:A, 4i75:B
21 2c40:A 302 219 0.1786 0.1821 0.2511 4.35e-13 2c40:B
22 2ff2:B 327 216 0.1981 0.1865 0.2824 1.26e-12 3b9g:A, 3b9g:B, 3epw:A, 3epw:B, 3epx:A, 3epx:B, 2ff1:A, 2ff1:B, 2ff2:A, 1hoz:A, 1hoz:B, 1hp0:A, 1hp0:B, 1kic:A, 1kic:B, 1kie:A, 1kie:B, 1r4f:A, 1r4f:B
23 4p5f:A 355 96 0.0812 0.0704 0.2604 0.54 7jlu:B, 4kl0:A, 4p5f:B
24 5nkk:D 258 63 0.0552 0.0659 0.2698 1.9 5nkk:F
25 1bu6:Y 499 101 0.0877 0.0541 0.2673 3.4 1bo5:O, 1bo5:Z, 1bot:O, 1bot:Z, 1bu6:O, 1bu6:Z, 1bu6:X, 1bwf:Y, 1bwf:O, 3ezw:A, 3ezw:B, 3ezw:E, 3ezw:G, 3ezw:C, 3ezw:D, 3ezw:F, 3ezw:H, 1gla:G, 1glb:G, 1glc:G, 1gld:G, 1gle:G, 1glf:O, 1glf:X, 1glf:Y, 1glf:Z, 1glj:Y, 1glj:O, 1gll:Y, 1gll:O
26 7aih:Z 150 78 0.0584 0.1200 0.2308 4.2 7am2:Z, 7ane:Z
27 4aq0:A 765 64 0.0584 0.0235 0.2812 5.4 4aq0:B, 2xsg:A, 2xsg:B
28 2zxr:A 616 40 0.0552 0.0276 0.4250 6.3
29 2zxp:A 648 40 0.0552 0.0262 0.4250 6.8 1ir6:A
30 3o2g:A 386 19 0.0325 0.0259 0.5263 8.3 4bg1:A, 4bgk:A, 4bgm:A, 4bhf:A, 4bhg:A, 4bhi:A, 4c5w:A, 4c8r:A, 4c8r:B, 4c8r:C, 4c8r:D, 4c8r:E, 4c8r:F, 4cwd:A, 3ms5:A, 3n6w:A
31 3nzi:A 211 69 0.0649 0.0948 0.2899 9.3 8se7:Q

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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