Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KRKIILDCDPGHDDAIAIMMAAKHPAIDLLGITIVAGNQTLDKTLINGLNVCQKLEINVPVYAGMPQPIMRQQIVADNIH
GDTGLDGPVFEPLTRQAESTHAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFTPS
AEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFEGPVHDATCIGYLI
NPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTKVGITIDTDWFWGLVEECVRGYIK

The query sequence (length=303) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3mkm:A 311 309 1.0000 0.9743 0.9806 0.0 3b9x:A, 3b9x:B, 3b9x:D, 3mkm:B, 3mkm:C, 3mkm:D, 3mkn:A, 3mkn:B, 3mkn:C, 3mkn:D, 1q8f:A, 1q8f:B, 1q8f:C, 1q8f:D
2 3b9x:C 283 301 0.9340 1.0000 0.9402 0.0
3 6ba0:A 312 306 0.4422 0.4295 0.4379 1.72e-81 6ba0:B, 6ba0:C, 6ba0:D
4 3g5i:A 305 301 0.4026 0.4000 0.4053 7.55e-72 3g5i:B, 3g5i:C, 3g5i:D, 1yoe:A
5 1ezr:A 312 301 0.4158 0.4038 0.4186 1.73e-70 8ctm:A, 8ctm:B, 8ctm:C, 8ctm:D, 1ezr:B, 1ezr:C, 1ezr:D
6 2mas:A 313 303 0.3993 0.3866 0.3993 2.66e-67 2mas:B, 2mas:C, 2mas:D
7 5tsq:A 312 302 0.4125 0.4006 0.4139 2.21e-66
8 4wr2:A 308 306 0.3927 0.3864 0.3889 4.79e-64
9 8qnd:A 297 297 0.3663 0.3737 0.3737 6.25e-57 8qnd:C, 8qnd:B, 8qnd:D
10 4kpo:A 317 281 0.3267 0.3123 0.3523 7.74e-47 4kpo:B, 6zk5:A, 6zk5:B
11 6ba1:A 316 316 0.3465 0.3323 0.3323 4.17e-43 6ba1:B, 6ba1:C, 6ba1:D, 6ba1:E, 6ba1:F, 6ba1:G, 6ba1:H, 6ba1:I, 6ba1:J, 6ba1:K, 6ba1:L, 6ba1:M, 6ba1:N, 6ba1:O, 6ba1:P, 6ba1:Q, 6ba1:R
12 6zk3:A 319 280 0.2838 0.2696 0.3071 9.28e-41 6zk1:A, 6zk1:B, 6zk1:C, 6zk1:D, 6zk2:A, 6zk2:B, 6zk2:C, 6zk2:D, 6zk3:B, 6zk3:C, 6zk3:D, 6zk3:E, 6zk3:F, 6zk4:A, 6zk4:B, 6zk4:C, 6zk4:D
13 8rih:B 333 327 0.3267 0.2973 0.3028 4.04e-37 8rih:A
14 3t8i:A 306 185 0.2112 0.2092 0.3459 5.92e-37 3t8i:B, 3t8i:C, 3t8i:D
15 4kpn:A 318 313 0.3036 0.2893 0.2939 8.51e-36 4kpn:B, 4kpn:C, 4kpn:D, 4kpn:E, 4kpn:F, 4kpn:G, 4kpn:H
16 8oi7:A 346 310 0.3036 0.2659 0.2968 1.83e-34 8oi7:B, 8oi9:A, 8oi9:B, 8oia:A, 8oia:B, 8oia:C, 8oia:D, 8oib:A, 8oib:B, 8oib:C, 8oib:D, 8oic:A, 8oic:B, 8oic:C, 8oic:D, 8oic:E, 8oic:F, 8oic:G, 8oic:H
17 8db6:B 304 183 0.2079 0.2072 0.3443 2.80e-26 8db6:A, 8db6:C, 8db6:D, 8db7:B, 8db7:A, 8db7:C, 8db7:D, 8db8:B, 8db8:A, 8db8:C, 8db8:D, 8db9:A, 8db9:B, 8db9:C, 8db9:D
18 5mj7:A 322 289 0.2739 0.2578 0.2872 4.19e-22 5mj7:B
19 3fz0:B 338 327 0.3036 0.2722 0.2813 7.38e-20 3fz0:A, 3fz0:C, 3fz0:D
20 2c40:A 302 219 0.1815 0.1821 0.2511 3.85e-13 2c40:B
21 4i72:A 328 304 0.2607 0.2409 0.2599 9.37e-13 4i70:A, 4i71:A, 4i72:B, 4i73:A, 4i73:B, 4i73:C, 4i73:D, 4i74:A, 4i75:A, 4i75:B
22 2ff2:B 327 216 0.2013 0.1865 0.2824 1.24e-12 3b9g:A, 3b9g:B, 3epw:A, 3epw:B, 3epx:A, 3epx:B, 2ff1:A, 2ff1:B, 2ff2:A, 1hoz:A, 1hoz:B, 1hp0:A, 1hp0:B, 1kic:A, 1kic:B, 1kie:A, 1kie:B, 1r4f:A, 1r4f:B
23 4p5f:A 355 97 0.0858 0.0732 0.2680 0.085 7jlu:B, 4kl0:A, 4p5f:B
24 5nkk:D 258 63 0.0561 0.0659 0.2698 1.9 5nkk:F
25 1bu6:Y 499 101 0.0891 0.0541 0.2673 2.8 1bo5:O, 1bo5:Z, 1bot:O, 1bot:Z, 1bu6:O, 1bu6:Z, 1bu6:X, 1bwf:Y, 1bwf:O, 3ezw:A, 3ezw:B, 3ezw:E, 3ezw:G, 3ezw:C, 3ezw:D, 3ezw:F, 3ezw:H, 1gla:G, 1glb:G, 1glc:G, 1gld:G, 1gle:G, 1glf:O, 1glf:X, 1glf:Y, 1glf:Z, 1glj:Y, 1glj:O, 1gll:Y, 1gll:O
26 7aih:Z 150 78 0.0594 0.1200 0.2308 4.2 7am2:Z, 7ane:Z
27 2zxp:A 648 40 0.0561 0.0262 0.4250 6.0 1ir6:A
28 2zxr:A 616 40 0.0561 0.0276 0.4250 6.3
29 3o2g:A 386 19 0.0330 0.0259 0.5263 8.4 4bg1:A, 4bgk:A, 4bgm:A, 4bhf:A, 4bhg:A, 4bhi:A, 4c5w:A, 4c8r:A, 4c8r:B, 4c8r:C, 4c8r:D, 4c8r:E, 4c8r:F, 4cwd:A, 3ms5:A, 3n6w:A
30 4aq0:A 765 60 0.0561 0.0222 0.2833 9.6 4aq0:B, 2xsg:A, 2xsg:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218