Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KRGILERLNAGEVVIGDGGFVFALEKRGYVKAGPWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASGQKVNEAACD
IARQVADEGDALVAGGVSQTPSYLSCKSETEVKKIFHQQLEVFMKKNVDFLIAEYFEHVEEAVWAVEALKTSGKPIAATM
CIGPEGDLHGVSPGECAVRLVKAGAAIVGVNCHFDPSTSLQTIKLMKEGLEAARLKAYLMSQPLAYHTPDCGKQGFIDLP
EFPFGLEPRVATRWDIQKYAREAYNLGVRYIGGCCGFEPYHIRAIAEELAPERGFLPPASEKHGSWGSGLDMHTKPWIRA
RARKEYWQNLRIASGRPYNPSMSKPDAWGVTKGAAELMQQKEATTEQQLRALFEKQKFKS

The query sequence (length=380) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1umy:D 381 381 0.9974 0.9948 0.9948 0.0 1lt8:A, 1lt8:B, 4m3p:A, 4m3p:B, 4m3p:C, 4m3p:D, 1umy:A, 1umy:B, 1umy:C
2 3bof:A 560 297 0.1974 0.1339 0.2525 4.25e-15 3bof:B, 3bol:A, 3bol:B, 1q8j:A, 1q8j:B
3 8g3h:A 841 271 0.1842 0.0832 0.2583 1.62e-09
4 5dmm:A 288 312 0.1947 0.2569 0.2372 3.48e-07
5 4ccz:A 611 302 0.1737 0.1080 0.2185 4.59e-05
6 4v36:A 325 110 0.0737 0.0862 0.2545 0.23
7 4cql:I 251 95 0.0553 0.0837 0.2211 0.99 4cql:A, 4cql:D, 4cql:E, 4cql:H, 4cql:L, 4cql:M, 4cql:P, 4cqm:A, 4cqm:D, 4cqm:E, 4cqm:H, 4cqm:I, 4cqm:L, 4cqm:M, 4cqm:P, 2pd6:A, 2pd6:B, 2pd6:C, 2pd6:D
8 1f8r:A 483 73 0.0500 0.0393 0.2603 2.3 1f8r:B, 1f8r:C, 1f8r:D, 1f8s:A, 1f8s:B, 1f8s:C, 1f8s:D, 1f8s:E, 1f8s:F, 1f8s:G, 1f8s:H, 2iid:A, 2iid:B, 2iid:C, 2iid:D
9 4f42:A 84 40 0.0342 0.1548 0.3250 2.9 4f44:A, 4f44:B
10 2xrh:A 100 44 0.0447 0.1700 0.3864 3.1
11 2uyy:A 292 32 0.0316 0.0411 0.3750 8.1 2uyy:D
12 3kgy:A 218 81 0.0632 0.1101 0.2963 10.0 3kgy:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218