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BioLiP
>protein
KRELLRHRDYKVDLESKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTLDQVKK
RFEVNKKKM

The query sequence (length=89) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8qzs:r 114 89 1.0000 0.7807 1.0000 1.70e-62 7abf:N, 7abg:N, 7abi:N, 8h6k:4N, 5o9z:N, 8q7n:r, 8qpe:r
2 5nrl:L 109 50 0.1685 0.1376 0.3000 1.61e-04
3 8i0r:v 173 33 0.1461 0.0751 0.3939 0.005 7abg:F, 7abh:F, 6ff4:7, 6ff7:7, 8i0p:v, 8i0t:v, 7q4o:1, 7q4p:1, 8qo9:G, 6qx9:A2, 8qxd:8, 8r0a:8, 8r0b:8, 8rm5:8, 7vpx:B
4 6g90:T 462 34 0.1573 0.0303 0.4118 0.14 7dco:u, 4dgw:A, 5nrl:T, 5zwm:u
5 8sic:G 419 27 0.1573 0.0334 0.5185 0.24 8sgn:G, 8sic:E
6 8pv1:Cb 101 32 0.1236 0.1089 0.3438 0.58 8pv2:Cb, 8pv3:Cb, 8pv4:Cb, 8pv5:Cb, 8pv6:Cb, 8pv7:Cb, 8pv8:Cb, 8pvk:Cb, 8pvl:Cb
7 8i0p:K 312 47 0.1348 0.0385 0.2553 1.1
8 9bh5:AY 123 79 0.2472 0.1789 0.2785 1.4 9cai:AY
9 8opt:A 783 30 0.1348 0.0153 0.4000 2.3 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
10 2nab:A 41 33 0.0899 0.1951 0.2424 2.6
11 8hfr:ox 143 30 0.1124 0.0699 0.3333 3.0 6ft6:I, 3jct:I, 6m62:I, 6n8j:I, 6n8k:I, 6n8l:I, 7ug6:I, 7uoo:I, 7uqb:I, 7uqz:I, 7v08:I, 6ylg:I, 6ylh:I, 6yly:I, 7z34:I
12 1am9:C 82 66 0.2247 0.2439 0.3030 3.0 1am9:D, 1am9:A, 1am9:B
13 3lmc:A 191 72 0.2584 0.1204 0.3194 3.6
14 8idf:A 459 28 0.0899 0.0174 0.2857 3.8
15 1x6f:A 88 41 0.1124 0.1136 0.2439 4.5
16 6nw9:A 616 53 0.2022 0.0292 0.3396 4.5 6nw9:B
17 4qbz:A 754 57 0.2022 0.0239 0.3158 5.0 5awa:A, 5awb:A, 5awc:A, 5awc:B, 5awc:C, 5awc:D, 5awd:A, 5az5:A, 5az5:B, 5az5:C, 5az5:D, 7crf:A, 7crf:B, 6kya:A, 6kya:B, 4qbz:B, 4qc0:A, 4qc0:B, 4r07:A, 4r07:B, 4r07:C, 4r07:D, 4r08:A, 4r08:B, 4r08:C, 4r08:D, 4r09:A, 4r09:B, 4r09:C, 4r09:D, 4r0a:A, 7r52:B, 7r53:A, 7r53:B, 7r54:A, 7r54:B, 4r6a:A, 4r6a:B, 7rc9:A, 7rc9:B, 6ty5:A, 6ty5:B, 6v9u:A, 6v9u:B, 3w3g:A, 3w3j:A, 3w3j:B, 3w3k:A, 3w3k:B, 3w3l:A, 3w3l:B, 3w3l:D, 3w3l:C, 3w3m:A, 3w3n:A, 3w3n:B, 6wml:A, 6wml:B, 6wml:C, 6wml:D, 3wn4:A, 5wyx:A, 5wyx:B, 5wyz:A, 5wyz:B, 7ytx:A, 7ytx:B, 5z14:A, 5z14:B, 5z15:A, 5z15:B, 6zjz:A, 6zjz:B
18 8pfi:B 734 57 0.2022 0.0245 0.3158 5.1 8pfi:A, 7r52:A
19 8c8j:A 698 38 0.1236 0.0158 0.2895 5.6
20 7s78:H 933 22 0.0899 0.0086 0.3636 6.0 6b1t:E, 6b1t:F, 6b1t:D, 6b1t:A, 6b1t:C, 6cgv:A, 6cgv:C, 7s78:D, 7s78:F, 7s78:E, 7s78:G, 7s78:J, 7s78:L
21 6ojb:A 251 51 0.1461 0.0518 0.2549 6.1
22 2mkd:A 60 27 0.0899 0.1333 0.2963 7.3 2mkn:A
23 4eyu:A 456 37 0.1461 0.0285 0.3514 8.4 4ask:A, 4ask:B, 4eyu:B, 4ez4:A, 4ez4:B, 4ezh:A, 4ezh:B, 6f6d:A, 5fp3:A, 5fp3:B, 5oy3:A, 2xue:A, 2xue:B, 2xxz:A, 2xxz:B
24 8uw3:A 1265 38 0.1236 0.0087 0.2895 9.1 7n8s:A, 7n94:A, 7n94:B, 8sp5:A, 8sp5:B, 8sp7:A, 8sxt:A, 8sxu:A, 1vyb:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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