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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KRAVVFAGDYAYIRQIETAMKSLCRHNSHLKIYLLNQDIPQEWFSQIRIYLQEMGGDLIDCKLIGSQFMTFARYFIPDFV
TEDKVLYLDSDLIVTGDLTDLFELDLGENYLAAARSCFGAGVGFNAGVLLINNKKWGSETIRQKLIDLTEKEHENVEEGD
QSILNMLFKDQYSSLEDQYNFQIGYDYGAATFKHQFIFDIPLEPLPLILHYISQDKPWNQFSVGRLREVWWEYSLMDWSV
ILNEWFSKSVKYPSKSQIFKLQCVNLTNSWCVEKIDYLAEQLPEVHFHIVAYTNMANELLALTRFPNVTVYPNSLPMLLE
QIVIASDLYLDLNHDRKLEDAYEFVLKYKKPMIAFDNTCSENLSEISYEGIYPSSIPKKMVAAIRSYMR

The query sequence (length=389) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5gvv:A 392 390 1.0000 0.9923 0.9974 0.0 5gvv:F, 5gvw:C, 5gvw:A, 5gvw:B, 5gvw:D
2 1ss9:A 280 250 0.1825 0.2536 0.2840 1.77e-17 1g9r:A, 1ga8:A
3 6u4b:A 570 187 0.1234 0.0842 0.2567 2.39e-07
4 6mw5:A 239 157 0.1311 0.2134 0.3248 9.46e-07 6mw8:A
5 4ueg:B 249 160 0.1080 0.1687 0.2625 0.012 4ueg:A
6 1zdf:A 258 136 0.0848 0.1279 0.2426 0.064 3v8z:A, 3v91:A, 1zdg:A
7 3t7m:A 263 137 0.0900 0.1331 0.2555 0.12 6eql:A, 6eql:B, 1ll2:A, 3qvb:A, 3rmv:A, 3rmw:A, 3t7m:B, 3t7n:A, 3t7n:B, 3t7o:A, 3t7o:B, 3u2t:A, 3u2u:A, 3u2u:B, 3u2v:A, 3u2v:B, 3u2w:A, 3u2w:B, 3u2x:A, 3u2x:B, 1zct:A, 1zct:B
8 3vif:A 473 96 0.0823 0.0677 0.3333 0.23 3ahz:A, 3ai0:A, 3vig:A, 3vij:A, 3vik:A, 3vil:A, 3vim:A, 3vin:A, 3vio:A, 3vip:A
9 6dus:A 310 146 0.0797 0.1000 0.2123 0.59 6cgi:A, 6cgi:B, 6cgi:C, 6cgi:D, 6dus:B, 6eyt:A, 6eyt:B
10 1kop:A 223 161 0.0848 0.1480 0.2050 1.1 8dpc:A, 8dpc:C, 8dpc:E, 8dpc:G, 8dpo:A, 8dpo:C, 8dpo:E, 8dpo:G, 8dqf:A, 8dqf:C, 8dqf:E, 8dqf:G, 8dr2:A, 8dr2:C, 8dr2:E, 8dr2:G, 8drb:A, 8drb:C, 8drb:E, 8drb:G, 8dyq:A, 8dyq:C, 8dyq:E, 8dyq:G, 1kop:B, 1koq:A, 1koq:B
11 5h18:A 272 24 0.0334 0.0478 0.5417 1.3 5y7f:A
12 2yk4:A 326 71 0.0617 0.0736 0.3380 1.6 2yk5:A, 2yk6:A, 2yk7:A
13 3r3t:A 95 31 0.0334 0.1368 0.4194 4.7 3r3t:B
14 1gcv:A 140 67 0.0463 0.1286 0.2687 5.0 1gcv:C, 1gcw:A, 1gcw:C
15 6b9u:A 244 53 0.0437 0.0697 0.3208 7.8 6b9u:B
16 5v1x:D 447 38 0.0411 0.0358 0.4211 9.1 5v12:F, 5v12:B, 5v1x:C, 5v1x:A, 5v1x:B
17 2f3o:A 773 41 0.0334 0.0168 0.3171 9.6 2f3o:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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