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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KRARSANIPGAILHSLAELQDGLNAMIDPSWRAVRSLDNWALAITMESTELLDSYPWKWWKNLNATPDLANVRIELVDIF
HFSLSGAMQMRSTPDDEIPAASLKPLKEVMTTFLPAKECTSDPYGFVFFPLTDTQNAIASFRNIIQLANAYRFDVIIECI
IYAAEDLGFNLVAYYIAKHTLNCIRQLSGYKDGSYVKVNNGVEDNSLLHNCIKDVSLDEVLDADKYVQAWNSIMANVYEA
FQIKESDRKDAERWFALAKENRL

The query sequence (length=263) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2yb0:E 264 263 1.0000 0.9962 1.0000 0.0 2cje:A, 2yay:A, 2yaz:A, 2yaz:B, 2yaz:D, 2yaz:E, 2yb0:A, 2yb0:B, 2yb0:D
2 4dl8:A 224 244 0.4981 0.5848 0.5369 4.56e-90 4dk4:A, 4dk4:B, 4dkb:A, 4dlc:A
3 1w2y:A 226 209 0.2738 0.3186 0.3445 1.67e-23 2cic:A, 1w2y:B
4 1q2v:A 518 82 0.0798 0.0405 0.2561 0.21 1q2v:B, 1q2v:C, 1q2v:D, 1q3q:A, 1q3q:B, 1q3q:C, 1q3q:D, 1q3r:A, 1q3s:A, 1q3s:B, 1q3s:C, 1q3s:D, 1q3s:E, 1q3s:F, 1q3s:G, 1q3s:H
5 4eez:B 342 60 0.0570 0.0439 0.2500 3.6 4eex:A, 4eex:B, 4eez:A
6 3vp5:A 185 50 0.0608 0.0865 0.3200 8.0 3vok:A
7 6khn:A 490 87 0.0875 0.0469 0.2644 8.6 6khn:B, 6kho:A, 6kho:B, 6khp:A, 6khp:B
8 8q0m:H 318 48 0.0532 0.0440 0.2917 9.4 8q1u:H, 8q25:H, 8q45:H, 8q47:H, 8q48:H, 8q4a:H, 7qsk:H, 7r45:H, 7r46:H, 7r47:H, 7r48:H, 7r4c:H, 7r4g:H, 7zd6:H, 6zka:H, 6zkc:H, 6zkd:H, 6zke:H, 6zkf:H, 6zkh:H, 6zki:H, 6zkj:H, 6zkl:H, 6zkm:H, 6zkn:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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