Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KRAGTVCSNCQTSTTTLWRRSPMGDPVCNACGLYYKLHQVNRPLTMRKDGIQTRNRKVSS

The query sequence (length=60) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2gat:A 66 60 1.0000 0.9091 1.0000 1.15e-40 1gat:A, 1gau:A, 3gat:A
2 4hc7:A 108 55 0.7333 0.4074 0.8000 1.85e-29 3dfv:D, 3dfv:C, 3dfx:A, 3dfx:B, 4hc9:A
3 4hc7:A 108 57 0.4167 0.2315 0.4386 3.55e-10 3dfv:D, 3dfv:C, 3dfx:A, 3dfx:B, 4hc9:A
4 4hca:A 99 54 0.7167 0.4343 0.7963 1.84e-28 4hc7:B
5 2m9w:A 63 57 0.6833 0.6508 0.7193 1.14e-26 8vg0:T, 8vg1:T
6 5o9b:A 68 49 0.6500 0.5735 0.7959 7.15e-26
7 3vd6:C 96 43 0.6333 0.3958 0.8837 1.06e-23 2l6y:A, 2l6z:A, 3vek:C, 3vek:F, 1y0j:A
8 4gat:A 66 52 0.5333 0.4848 0.6154 1.31e-19 5gat:A, 6gat:A, 7gat:A, 2vus:I, 2vus:J, 2vus:K, 2vus:L, 2vus:M, 2vus:N, 2vus:O, 2vus:P, 2vut:I, 2vut:J, 2vut:K, 2vut:L, 2vut:M, 2vut:N, 2vut:O, 2vut:P, 2vuu:I, 2vuu:J, 2vuu:K, 2vuu:L, 2vuu:M, 2vuu:N, 2vuu:O, 2vuu:P
9 6zfv:A 63 41 0.3667 0.3492 0.5366 1.97e-10 1gnf:A
10 8j48:A 38 34 0.2667 0.4211 0.4706 4.26e-06 8j48:D
11 2kae:A 56 41 0.3000 0.3214 0.4390 8.26e-04
12 2j7a:B 498 38 0.2333 0.0281 0.3684 0.23 2j7a:A, 2j7a:D, 2j7a:E, 2j7a:G, 2j7a:H, 2j7a:J, 2j7a:K, 2j7a:M, 2j7a:N, 2j7a:P, 2j7a:Q, 2vr0:A, 2vr0:B, 2vr0:D, 2vr0:E
13 8v87:q 371 26 0.1167 0.0189 0.2692 1.1 6elz:q, 6em5:q, 7nac:q, 7ohr:q, 7r7a:q, 7r7c:q, 8v83:q, 8v84:q
14 1oah:B 482 37 0.2000 0.0249 0.3243 1.4 1oah:A
15 8fkt:SY 378 26 0.1333 0.0212 0.3077 3.6 8fku:SY, 8fkv:SY, 8fkw:SY, 8fkx:SY, 8fky:SY
16 8cen:M 310 36 0.2000 0.0387 0.3333 3.9 8ceo:M, 5fmf:P, 6gyk:M, 6gyl:M, 6gym:M, 7ml0:M, 7ml1:M, 7ml2:M, 7o4i:M, 7o4j:M, 7o72:M, 7o73:M, 7o75:M, 5oqj:M, 5oqm:M, 7zs9:M, 7zsa:M, 7zsb:M
17 6wj9:B 308 37 0.1833 0.0357 0.2973 6.8 6wj9:A, 6wja:A, 6wja:B, 6wjb:A, 6wjb:B
18 4v1n:M 299 27 0.1667 0.0334 0.3704 7.1 4bbr:M, 4bbs:M, 4v1o:M
19 7ml4:M 234 27 0.1667 0.0427 0.3704 7.2 5fyw:M, 5fz5:M
20 8esq:q 341 26 0.1000 0.0176 0.2308 7.3

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218