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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KRAGSKADRPSLQIQTLQHAGTTMITVPSGGVCDLINTYARGSDEGNRHTSETLTYKIAIDYHFVADAAACRYSNTGTGV
MWLVYDTTPGGQAPTPQTIFAYPDTLKAWPATWKVSRELCHRFVVKRRWLFNMETDGRIGSDIPPSNASWKPCKRNIYFH
KFTSGLGVRTQWKNVTDGGVGAIQRGALYMVIAPGNGLTFTAHGQTRLYFKSVGN

The query sequence (length=215) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ugq:B 215 215 1.0000 1.0000 1.0000 6.20e-164 8ugq:A, 8ugq:C, 8ugq:D, 8ugq:E, 8ugq:F, 8ugq:G, 8ugq:H, 8ugq:I, 8ugq:J, 8ugq:K, 8uh4:A, 8uh4:B, 8uh4:C, 8uh4:D, 8uh4:E, 8uh4:F, 8uh4:R, 8uh4:G, 8uh4:H, 8uh4:Z, 8uh4:I, 8uh4:J, 8uh4:K, 8uh4:7, 8uh4:L, 8uh4:M, 8uh4:c, 8uh4:N, 8uh4:O, 8uh4:d, 8uh4:P, 8uh4:Q, 8uh4:V, 8uh4:S, 8uh4:T, 8uh4:i, 8uh4:U, 8uh4:W, 8uh4:X, 8uh4:f, 8uh4:Y, 8uh4:a, 8uh4:b, 8uh4:s, 8uh4:e, 8uh4:z, 8uh4:g, 8uh4:k, 8uh4:h, 8uh4:j, 8uh4:l, 8uh4:w, 8uh4:n, 8uh4:m, 8uh4:r, 8uh4:o, 8uh4:p, 8uh4:6, 8uh4:q, 8uh4:x, 8uh4:t, 8uh4:y, 8uh4:u, 8uh4:5, 8uh4:v, 8uh4:1, 8uh4:4, 8uh4:2, 8uh4:3, 8uh4:8
2 4v4p:AN 122 67 0.0930 0.1639 0.2985 2.2 4v4r:BO, 4v4s:BO, 4v4t:BO
3 8otz:EV 425 32 0.0558 0.0282 0.3750 3.0
4 7w62:E 141 43 0.0605 0.0922 0.3023 7.8 7bsm:D, 7bsm:F, 7bsm:G, 7bsm:J, 7bsm:K, 7bsm:L, 7bsm:M, 7bsm:N, 7bsm:H, 7bsm:I, 7bsn:A, 7bsn:B, 7bsn:C, 7bsn:E, 7bsn:F, 7bsn:H, 7bsn:I, 7bsn:J, 7bsn:K, 7bsn:N, 7bsn:D, 7bsn:G, 7bsn:L, 7bsn:M, 7bt8:B, 7bt8:D, 7bt8:E, 7bt9:B, 7bt9:G, 7bt9:A, 7bt9:D, 7bt9:E, 7bt9:F, 7bt9:C, 7bt9:H, 7bt9:I, 7bt9:J, 7bt9:K, 7bt9:L, 7bt9:M, 7bt9:N, 7btl:B, 7btl:A, 7btl:E, 7btl:F, 7btl:C, 7btl:G, 7btl:D, 7ded:B, 7ded:C, 7ded:F, 7ded:E, 7w62:B, 7w62:J, 7w62:G, 7w62:A, 7w62:D, 7w62:F, 7w62:C, 7w62:H, 7w62:I, 7w62:K, 7w62:L, 7w62:M, 7w62:N

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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