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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KRAFDFSAHGRRHVALRIAYMGWGYQGFASQENTNNTIEEKLFEALTKTRLVESRQTSNYHRCGRTAKGVSAFGQVISLD
LRSQFPEEIRYTHILNRVLPPDIRILAWAPVEPSFSARFSCLERTYRYFFPRADLDIVTMDYAAQKYVGTHDFRNLCKMD
VANGVINFQRTILSAQVQLVGQSPGEGRWQEPFQLCQFEVTGQAFLYHQVRCMMAILFLIGQGMEKPEIIDELLNIEKNP
QKPQYSMAVEFPLVLYDCKFENVKWIYDQEAQEFNITHLQQLWANHAVKTHMLYSMLQGLDTVPSVIKQTSAFVMRTYKP
LMDRPKCQG

The query sequence (length=329) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 9ene:A 329 329 1.0000 1.0000 1.0000 0.0 9enb:A, 9enb:B, 9enc:A, 9enc:B, 9ene:B, 9enf:B, 8okd:A, 8okd:B
2 9enf:A 254 300 0.7720 1.0000 0.8467 0.0
3 4nz6:B 309 277 0.2432 0.2589 0.2888 5.89e-21 4nz6:A
4 7r9g:A 386 126 0.1368 0.1166 0.3571 1.39e-12 7r9f:A
5 7r9g:A 386 201 0.1246 0.1062 0.2040 0.004 7r9f:A
6 2nqp:C 264 237 0.1915 0.2386 0.2658 2.12e-09 2nqp:D, 2nr0:A, 2nr0:B, 2nr0:C, 2nr0:D, 2nre:A
7 6sga:FC 311 173 0.1216 0.1286 0.2312 0.073 6sgb:FC
8 8e67:F 97 48 0.0517 0.1753 0.3542 0.21 8e66:A, 8e66:F, 8e67:A, 8e67:I, 8e67:L, 4mhg:A
9 6sga:FB 377 67 0.0486 0.0424 0.2388 0.97 6sgb:FB
10 6sdk:A 199 20 0.0304 0.0503 0.5000 5.0 6sdk:B, 6sdk:C, 6sdk:D
11 4gjw:B 96 39 0.0456 0.1562 0.3846 7.8
12 3fef:A 434 142 0.1033 0.0783 0.2394 8.1 3fef:B, 3fef:C, 3fef:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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