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BioLiP
>protein
KQYSQEELKEMALVEIAHELFEEHKKPVPFQELLNEIASLLGVKKEELGDRIAQFYTDLNIDGRFLALSDQTWGLRSWY

The query sequence (length=79) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4nc7:A 79 79 1.0000 1.0000 1.0000 3.20e-54
2 5dxh:D 981 46 0.2152 0.0173 0.3696 0.14 8gua:A, 6oac:A
3 5swp:A 1060 46 0.2152 0.0160 0.3696 0.14 6gvh:A, 5swt:A, 8v8u:A, 8v8u:C
4 6jqm:A 678 38 0.2025 0.0236 0.4211 0.15 6jqm:B, 6jqm:C, 6jqm:D, 6jqm:E, 6jqm:F, 6jqn:A, 6jqn:B, 6jqn:C, 6jqn:D, 6jqn:E, 6jqn:F, 6jqo:A, 6jqo:B, 6jqo:C, 6jqo:D, 6jqo:E, 6jqo:F
5 5itd:A 995 46 0.2152 0.0171 0.3696 0.15 5dxh:A, 8ilr:A, 8ils:A, 8ilv:A, 7k6m:A, 7k6o:A, 7r9v:A, 7r9y:A, 8sbc:A, 8sbj:A, 8twy:A, 7tz7:A, 5xgj:A
6 4ykn:A 1205 46 0.2152 0.0141 0.3696 0.15 4a55:A, 8am0:A, 8exl:A, 8exo:A, 8exu:A, 8exv:A, 5fi4:A, 8gub:A, 6gvf:A, 6gvg:A, 6gvi:A, 3hhm:A, 7jiu:A, 4jps:A, 4l23:A, 4l2y:A, 7mlk:A, 7myo:A, 4ovv:A, 8ow2:A, 7pg6:A, 6pys:A, 5sx9:A, 5sxj:A, 8tdu:A, 8tdu:C, 8tgd:A, 8tgd:C, 8ts9:A, 8tsa:A, 8tsb:A, 8tsc:A, 8tsd:A, 4tv3:A, 5uk8:A, 5ukj:A, 5ul1:A, 8v8h:A, 8v8h:C, 8v8i:A, 8v8i:C, 8v8j:A, 8v8j:C, 8v8v:A, 8v8v:C, 8w9a:A, 8w9b:A, 4waf:A, 5xgh:A, 5xgi:A, 3zim:A, 4zop:A
7 2h2n:A 317 27 0.1266 0.0315 0.3704 3.0 2h2n:B, 2h2u:A, 2h2u:B, 1s18:A, 1s18:B, 1s1d:A, 1s1d:B
8 4ft6:A 387 50 0.2278 0.0465 0.3600 4.6
9 5eqt:A 249 45 0.1646 0.0522 0.2889 4.9
10 8x2h:A 2363 40 0.1646 0.0055 0.3250 8.4 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C
11 8x2i:A 2303 40 0.1646 0.0056 0.3250 8.6
12 4xdy:A 331 30 0.1392 0.0332 0.3667 9.6 4xdy:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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