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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KQSIERITKILLDELENVRENEQIRNIINSWKPLPSPEKSSIYAVDGSRSVSRLSGTVIYFLSALAVGSGKQLRLSYANA
IKSNYGTSDQIVRMQMETLENMLGYLAYRKLEGEKRAILMDGTLTGSLVRPPVYPEDIRSLNVMRALIGESDFENLLNEF
LEKLRDHYRKVEEHLEKNGNYDSPILTDNVVEKLRKKYIDTKVIAYGSGKVKVKIPRRVIPIEVLESSRGKSVDELLQEL
DEEKVELYLGKDDIYDALHMTLSYIEYLYSIDKLLEVKNLAYIAKSFYTKTLARTLGVEIVDTALLDAVIRTLIGHEKEG
YLEIEHAVVPPKWSFPDFLLSKFRNIEKLIDKGIHLAYVRFEQGDVIYMLQSTTNIEKILPLILHHKAGGYLRPLQLAHH
GVKKEARHTLEALINALRNRDPAL

The query sequence (length=424) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3taz:B 433 434 0.9858 0.9654 0.9631 0.0 3tal:A, 3tal:B, 3taz:A
2 3es7:A 387 131 0.0873 0.0956 0.2824 0.64 3es7:B, 3es8:A, 3es8:B, 3es8:C, 3es8:D, 3es8:E, 3es8:F, 3es8:G, 3es8:H, 3fyy:A, 3fyy:B, 3hpf:A, 3hpf:B, 2oqy:A, 2oqy:B, 2oqy:C, 2oqy:D, 2oqy:E, 2oqy:F, 2oqy:G, 2oqy:H
3 5lmx:B 1115 210 0.1203 0.0457 0.2429 0.65
4 5m5w:B 1183 210 0.1203 0.0431 0.2429 0.73 4c2m:B, 4c2m:Q, 4c3h:B, 4c3i:B, 4c3j:B, 5g5l:B, 6h67:B, 6h68:B, 6hko:B, 6hlq:B, 6hlr:B, 5m3f:B, 5m3m:B, 5m5x:B, 5m5y:B, 5m64:B, 5n5y:B, 5n5z:B, 5n60:B, 5n61:B, 5oa1:B, 6rqh:B, 6rql:B, 6rqt:B, 6rrd:B, 6rui:B, 6ruo:B, 6rwe:B, 6tps:B, 5w5y:B, 5w64:B, 5w65:B, 5w66:B, 4ym7:AB, 4ym7:BB, 4ym7:CB, 4ym7:DB, 4ym7:EB, 4ym7:FB
5 6rax:4 626 56 0.0401 0.0272 0.3036 1.3 6raw:4, 6ray:4, 6raz:4
6 2p2v:A 275 31 0.0330 0.0509 0.4516 2.7
7 5zns:A 381 72 0.0472 0.0525 0.2778 4.0 5znt:A
8 1b87:A 181 83 0.0637 0.1492 0.3253 4.5 2a4n:A, 2a4n:B, 1n71:A, 1n71:B, 1n71:C, 1n71:D
9 1uzn:A 239 26 0.0307 0.0544 0.5000 5.2
10 2dby:A 355 92 0.0590 0.0704 0.2717 5.9
11 3a35:A 184 49 0.0401 0.0924 0.3469 9.7 3a35:B, 3a3b:B, 3a3b:A, 3a3g:A, 3a3g:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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