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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KQRKDSHKEVERRRRENINTAINVLSDLLPVRESSKAAILACAAEYIQKLKETDEANIEKWTLQKLLSEQNASQLASANE
KLQEELGNAYKEIEYMKRVLRKEGIEYEDM

The query sequence (length=110) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ow1:B 116 110 1.0000 0.9483 1.0000 1.60e-75 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
2 1an4:A 65 61 0.2182 0.3692 0.3934 2.59e-07 1an4:B
3 8ia3:E 111 60 0.2182 0.2162 0.4000 9.07e-07 8ia3:A, 8ia3:B, 8ia3:F
4 7d8t:A 199 56 0.2091 0.1156 0.4107 8.96e-06 4ati:A, 4ati:B, 4atk:A, 4atk:B, 7d8t:B, 6g1l:A, 8vu0:A, 8vu0:B
5 5eyo:C 88 78 0.2364 0.2955 0.3333 9.20e-05 1an2:A, 5eyo:A, 1hlo:B, 1nkp:B, 1nkp:E, 1nlw:B, 1nlw:E
6 5nj8:D 134 55 0.1727 0.1418 0.3455 7.47e-04
7 1hlo:A 80 48 0.1636 0.2250 0.3750 0.001
8 7xi4:A 283 55 0.1727 0.0671 0.3455 0.001 8g4a:A, 8g4a:B, 5nj8:B, 5sy7:A, 5v0l:A, 7xhv:A, 4zph:A, 4zpk:A
9 4zpr:A 235 52 0.1636 0.0766 0.3462 0.002
10 7xi3:A 287 56 0.1636 0.0627 0.3214 0.006
11 5gnj:B 77 47 0.1727 0.2468 0.4043 0.008 5gnj:G, 5gnj:I, 5gnj:A, 5gnj:E, 5gnj:F, 5gnj:M, 5gnj:N
12 1am9:C 82 56 0.1636 0.2195 0.3214 0.032 1am9:D, 1am9:A, 1am9:B
13 8osk:M 316 78 0.2091 0.0728 0.2949 0.050 4h10:B, 8osl:M, 8osl:O
14 1a0a:A 63 58 0.1545 0.2698 0.2931 0.053 1a0a:B
15 8osl:N 290 52 0.1364 0.0517 0.2885 0.089 4h10:A, 8osk:N, 8osl:P
16 7f2f:B 94 57 0.1727 0.2021 0.3333 0.099 7f2f:A
17 5tvn:A 393 61 0.1636 0.0458 0.2951 0.60 6drx:A, 6dry:A, 6drz:A, 6ds0:A, 4ib4:A, 4nc3:A, 5tud:A, 5tud:D
18 1nlw:A 79 61 0.1364 0.1899 0.2459 0.61 1nlw:D
19 2ypa:A 67 44 0.1545 0.2537 0.3864 1.5 2ypb:A
20 5zt7:A 254 66 0.1455 0.0630 0.2424 1.8 6jv6:A, 5zt7:B, 5zta:A, 5zta:B
21 8osb:B 66 50 0.1455 0.2424 0.3200 3.4
22 6uij:A 620 33 0.1091 0.0194 0.3636 3.5 9cbf:A, 9cbg:A, 9cbi:A, 9cbj:A, 6uhv:A, 6uii:A, 6uil:A, 6uim:A
23 3k2s:A 243 23 0.1091 0.0494 0.5217 3.6 6cch:A, 3k2s:B, 7rsc:D, 7rsc:E, 7rse:D, 7rse:E, 6w4e:D
24 7sgg:A 644 33 0.1091 0.0186 0.3636 4.3 9cbh:A, 7kuq:A, 7kur:A, 7kus:A, 7kut:A, 7kuv:A, 7sgi:A, 7sgj:A, 7sgk:A, 5td7:A, 7u3m:A, 7u59:A, 7u69:A, 7u6a:A, 7u6b:B, 6ufn:A, 6ufo:A, 6uhu:A, 6vnq:A, 6wbq:A, 6wdv:A, 6wdw:A, 6wdx:A, 6wdy:A
25 5gke:A 239 78 0.2091 0.0962 0.2949 4.4 5gke:B, 5gkf:A, 5gkf:B, 5gkg:A, 5gkg:B, 5gkh:A, 5gkh:B, 5gki:A, 5gki:B
26 1a59:A 377 50 0.1273 0.0371 0.2800 4.6
27 7rd6:A 929 39 0.1273 0.0151 0.3590 7.5 7rd7:A, 7rd8:A
28 7xi3:B 314 49 0.1545 0.0541 0.3469 8.4 7xhv:B, 7xi4:B
29 6sl2:A 619 63 0.1636 0.0291 0.2857 8.8 5nl7:A, 6sl3:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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