Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KQMLTRKEDLLTVLKQISALKYVSNLYEFLLATEKIVQTSELDTQFQEFLTTTIIASEQNLVENYKQKYNQPNFSQLTIK
QVIDDSIILLGNKQNYVQQIGTTTIGFYVEYENINLSRQTLYSSNFRNLLNIFGEEDFKYFLIDFLVFTKVEQNGYLQVA
GVCLNQYFSENQYIYPEIQRSQIFYCNHMGREPGVFKSSFFNYSEPQTIIKKTLLKEYQSKNFSCQEERDLFLEFTEKIV
QNFHNINFNYLLKKFCKLPENYQSLKSQVKQIVQSENKANQQSCENLFNSLYDTEISYKQITNFLRQIIQNCVPNQLLGK
KNFKVFLEKLYEFVQMKRFENQKVLDYICFMDVFDVEWFVDLKNQKFTQKRKYISDKRKILGDLIVFIINKIVIPVLRYN
FYITEKHKEGSQIFYYRKPIWKLVSKLTIVKLEEENLEKVEEKLIPEDSFQKYPQGKLRIIPKKGSFRPIMTFLRKDKQK
NIKLNLNQILMDSQLVFRNLKDMLGQKIGYSVFDNKQISEKFAQFIEKWKNKGRPQLYYVTLDIKKCYDSIDQMKLLNFF
NQSDLIQDTYFINKYLLFQRNKRPLLQIMDNINFPYYFNLKERQIAYSLYDDDDQILQKGFKEIQSDDRPFIVINQDKPR
CITKDIIHNHLKHISQYNVISFNKVKFRQKRGIPQGLNISGVLCSFYFGKLEEEYTQFLKNAEQVNGSINLLMRLTDDYL
FISDSQQNALNLIVQLQNCANNNGFMFNDQKITTNFQFPQEDYNLEHFKISVQNECQWIGKSIDMNTLEIKSIQKQTQQE
INQTINVAISIKNLKSQLKNKLRSLFLNQLIDYFNPNINSFEGLCRQLYHHSKATVMKFYPFMTKLFQIDLKKSKQYSVQ
YGKENTNENFLKDILYYTVEDVCKILCYLQFEDEINSNIKEIFKNLYSWIMWDIIVSYLKKKKQFKGYLNKLLQKIRKSR
FFYLKEGCKSLQLILSQQKYQLNKKELEAIEFIDLNNLIQDIKTLIPKISAK

The query sequence (length=1012) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8gap:A 1012 1012 1.0000 1.0000 1.0000 0.0 5c9h:A, 7lma:A, 7lmb:A, 7uy5:A, 7uy6:A
2 6d6v:A 980 1013 0.9634 0.9949 0.9625 0.0 5c9h:B
3 7qxa:A 954 672 0.1462 0.1551 0.2202 7.39e-29 7bg9:A, 7qxb:A, 7qxs:A, 7trd:A, 7tre:A, 7trf:A
4 7v99:A 991 841 0.1749 0.1786 0.2105 1.04e-28 5ugw:A
5 6zdp:A 683 505 0.1067 0.1581 0.2139 6.00e-16
6 6zdu:A 693 458 0.0958 0.1400 0.2118 3.41e-09 6zdq:A, 6zdu:B
7 5cqg:A 596 182 0.0395 0.0671 0.2198 0.008 5cqg:B, 6e53:A, 7kqm:A, 7kqn:A, 7kqn:D, 3kyl:A, 6uso:A, 6usp:A, 6usq:A, 6usr:A
8 5tth:A 671 51 0.0168 0.0253 0.3333 3.4 6d14:A, 7exp:A, 4ipe:A, 4ivg:A, 4iyn:A, 4j0b:A, 4mli:A, 4mli:C, 4mls:A, 5tvu:A, 5tvw:A, 5tvx:A
9 7kcl:B 614 51 0.0168 0.0277 0.3333 3.5 7c04:A, 7c7b:A, 5f5r:A, 5f5r:B, 5hph:A, 5hph:B, 7kck:A, 7kck:B, 7kcl:A, 7kcm:A, 7kcm:B, 7klu:A, 7klu:B, 7klu:D, 7klu:C, 7klv:A, 7klv:B, 6xg6:A, 6xg6:B, 4z1i:A, 4z1i:B, 4z1i:C, 4z1i:D
10 5tth:B 621 51 0.0168 0.0274 0.3333 3.9 6d14:B, 7exp:B, 4ipe:B, 4iyn:B, 4j0b:B, 5tvu:B, 5tvw:B, 5tvx:B
11 2ixp:C 316 22 0.0099 0.0316 0.4545 4.1 2ixp:A, 2ixp:B, 2ixp:D
12 7zol:B 1702 60 0.0168 0.0100 0.2833 5.0 7zoq:B
13 6ly5:G 214 44 0.0148 0.0701 0.3409 5.3 6l4t:8, 6l4u:8
14 4jb0:A 367 49 0.0178 0.0490 0.3673 5.6 4eyq:A, 4fb4:A, 3tx6:A, 3uk0:A, 3ukj:A
15 6r7x:A 629 44 0.0188 0.0302 0.4318 7.7 5oc9:A, 5oc9:B, 6r65:A, 6r65:B, 6r7x:B, 6r7y:A, 6r7y:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218