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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KQKVFIIRKSLLDELMEVQHFRTIYHMFIAGLCVFIISTLAIDFILLEFDLLIFSFGQLPLALVTWVPMFLSTLLAPYQA
LRLWARGGLGCALLAAHAVVLCALPVHVAVEHQLPPASRCVLVFEQVRFLMKSYSFLREAVPGILRAAPSFSSYLYFLFC
PTLIYRETYPRTPYVRWNYVAKNFAQALGCVLYACFILGRLCVPVFANMSREPFSTRALVLSILHATLPGIFMLLLIFFA
FLHCWLNAFAEMLRFGDRMFYRDWWNSTSFSNYYRTWNVVVHDWLYSYVYQDGLRLLGARARGVAMLGVFLVSAVAHEYI
FCFVLGFFYPVMLILFLVIGGMLNFMAWNVLMWTMLFLGQGIQVSLYCQEWYARR

The query sequence (length=375) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7n6q:A 375 375 1.0000 1.0000 1.0000 0.0 7n6q:B, 7n6q:C, 7n6q:D, 7n6r:A, 7n6r:B, 7n6r:C, 7n6r:D
2 6l47:A 416 401 0.5840 0.5264 0.5461 4.00e-152 6l47:B, 6l48:B, 6l48:A, 6p2j:A, 6p2j:B, 6p2p:A, 6p2p:B, 6p2p:C, 6p2p:D, 6vum:A, 6vum:B, 6vum:C, 6vum:D
3 6vz1:A 411 238 0.2027 0.1849 0.3193 8.39e-30 8esm:A, 8esm:B, 8etm:A, 8etm:B, 6vp0:C, 6vp0:E, 6vyi:A, 6vyi:B, 6vz1:B
4 8bpx:M 494 136 0.0933 0.0709 0.2574 0.20 7a23:M, 7aqq:M, 7ar7:M, 7ar8:M, 7arb:M, 8bef:M
5 5zi5:A 850 85 0.0693 0.0306 0.3059 1.4 5zi5:B, 5zi7:A, 5zi7:B, 5zie:A, 5zie:B
6 7yp3:F 419 82 0.0640 0.0573 0.2927 2.9 7yp3:B, 7yp3:C, 7yp3:D, 7yp3:E, 7yp5:A, 7yp5:B, 7yp6:A, 7yp6:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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