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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KQFMNKQRTLLISSRGVNYRHRHLIQDLSGLLPHSRKEPKLDTKKDLQQLNEIAELYNCNNVLFFEARKHQDLYLWLSKP
PNGPTIKFYIQNLHTMDELNFTGNCLKGSRPVLSFDQRFESSPHYQLIKELLVHNFGVPPNARKSKPFIDHVMSFSIVDD
KIWVRTYEISHSTKNKEEYEDGEEDISLVEIGPRFVMTVILILEGSFGGPKIYENKQYVSPNVVRAQIKQQAAEEAKSRA
EAAVERKIKRRENVLAADPLSNDALF

The query sequence (length=266) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7nac:A 266 266 1.0000 1.0000 1.0000 0.0 6c0f:b, 6cb1:b, 8e5t:b, 6elz:A, 6em1:A, 6em3:A, 6em4:A, 7ohr:A, 7ohs:A, 7ohv:A, 7ohw:A, 7r7a:A, 8v83:A, 8v84:A, 8v87:A, 5z3g:a
2 8i9p:CA 260 250 0.5639 0.5769 0.6000 1.40e-113 8i9r:CA, 8i9t:CA, 8i9v:CA, 8i9w:CA, 8i9x:CA, 8i9y:CA, 8i9z:CA, 8ia0:CA
3 8eti:A 254 257 0.5414 0.5669 0.5603 9.85e-112 8esq:A, 8esr:A, 8etg:A, 8eth:A, 8eup:A, 8euy:A, 8ev3:A
4 8fkp:SO 307 263 0.4737 0.4104 0.4791 6.70e-91 8fkq:SO, 8fkr:SO, 8fks:SO, 8fkt:SO, 8fku:SO, 8fkv:SO, 8fkw:SO, 8fkx:SO, 8fky:SO
5 8fl0:ND 270 121 0.1203 0.1185 0.2645 0.001 8ir1:T, 8ir3:T
6 8eup:x 306 171 0.1391 0.1209 0.2164 0.019 8esq:x, 8eth:x, 8eti:x, 8euy:x, 8ev3:x
7 7aju:CJ 256 133 0.1316 0.1367 0.2632 0.040 6zqd:CJ, 6zqe:CJ
8 7ajt:CJ 282 133 0.1316 0.1241 0.2632 0.042 7d4i:5G, 7d5s:5G, 7d5t:5G, 7d63:5G, 6ke6:5G, 6lqp:5G, 6lqq:5G, 6lqr:5G, 6lqs:5G, 6lqt:5G, 6lqu:5G, 6lqv:5G, 7suk:SM, 5wlc:SM, 5wyj:MB, 5wyk:MB, 6zqa:CJ, 6zqb:CJ, 6zqc:CJ, 6zqf:CJ, 6zqg:CJ
9 8fkp:NN 244 226 0.1654 0.1803 0.1947 0.16 8fkq:NN, 8fkr:NN, 8fks:NN
10 7mq8:SM 290 203 0.1504 0.1379 0.1970 0.38 7mq9:SM, 7mqa:SM
11 6rxt:CK 297 157 0.1466 0.1313 0.2484 0.65 5jpq:c, 5oql:b, 6rxu:CK, 6rxv:CK, 6rxx:CK, 6rxy:CK, 6rxz:CK
12 7mdl:A 474 50 0.0752 0.0422 0.4000 0.85 3bcb:A, 8g9z:A, 8g9z:B, 8g9z:C, 8g9z:D, 3hl2:A, 3hl2:B, 3hl2:C, 3hl2:D, 7l1t:A, 7mdl:B, 7mdl:C, 7mdl:D, 4zdl:A, 4zdl:B, 4zdo:A, 4zdo:B, 4zdo:C, 4zdo:D, 4zdp:A, 4zdp:B, 4zdp:C, 4zdp:D
13 7kl6:A 147 51 0.0639 0.1156 0.3333 3.8
14 4eqm:A 269 117 0.1128 0.1115 0.2564 4.1 4eqm:B, 4eqm:C, 4eqm:D, 4eqm:E, 4eqm:F
15 1sp3:A 436 116 0.1090 0.0665 0.2500 5.9
16 8v83:Z 253 233 0.2180 0.2292 0.2489 6.5 6c0f:v, 8v84:Z
17 3nj3:A 327 51 0.0602 0.0489 0.3137 6.7 3nj3:B, 1vbr:A, 1vbr:B
18 7rf9:A 381 54 0.0639 0.0446 0.3148 8.5 7rf9:B, 7rf9:C, 7rf9:D, 7rgb:A, 7rgb:B, 7rgb:C, 7rgb:D
19 8fkp:NS 305 214 0.1992 0.1738 0.2477 9.2 8fkr:NS, 8fkt:NS, 8fkv:NS

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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