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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KQAILYVGHGSRVKKAQQEAAAFLEGCKAHISVPVQEISFLELQEPTIETGFEACVKQGATHIAVVPLLLLTAAHAKHDI
PEEIVRVASRYPSVRISYGKPIGIDEEVVKAVYHRMKDIGVPYENARVVLIGRGSSDPDVKRDVTGIANLLQEMVPVKEV
IPCFLTACGPNYKEVFSELEKDDGITTFIVPYLLFTGMLMNEIEREVQKLKAHNPNVYLSSYIGFHPHVKNAFLNRVRET
AANSEGQFDFDGGS

The query sequence (length=254) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5zt7:A 254 254 1.0000 1.0000 1.0000 0.0 6jv6:A, 5zt7:B, 5zta:A, 5zta:B
2 6m29:A 122 105 0.1378 0.2869 0.3333 4.93e-12 8i57:A, 8i57:B, 8i58:A, 8i58:B, 6m27:A, 6m27:B, 6m28:A, 6m28:B, 6m29:B, 6m2e:A, 6m2e:B, 6m2f:A, 6m2f:B, 6m2g:A, 6m2g:B, 6m2h:A, 6m2h:B
3 7dyr:Z 274 106 0.0984 0.0912 0.2358 3.0 7dyr:C, 7dyr:F, 6k1h:Z, 6k1h:F, 6k1h:C
4 8ow1:B 116 66 0.0630 0.1379 0.2424 3.1 8ovw:A, 8ovw:B, 8ow0:A, 8ow0:B, 8ow1:A, 7ssa:L, 7ssa:K
5 6rm3:LEE 123 42 0.0591 0.1220 0.3571 3.7
6 7vyx:A 1211 97 0.1024 0.0215 0.2680 3.7 7vyx:B
7 3snp:A 850 89 0.0984 0.0294 0.2809 3.7 3sn2:A, 3snp:B
8 5fg3:A 598 38 0.0630 0.0268 0.4211 4.0 5yt0:A
9 3edo:A 151 69 0.0827 0.1391 0.3043 4.2 3edo:B
10 3exe:A 363 55 0.0709 0.0496 0.3273 4.7 6cfo:A, 6cfo:C, 3exe:C, 3exe:E, 3exe:G, 3exf:A, 3exf:C, 3exf:E, 3exf:G, 3exh:A, 3exh:C, 3exh:G, 1ni4:C, 1ni4:A, 2ozl:A, 2ozl:C
11 8wch:A 396 42 0.0630 0.0404 0.3810 4.8 8wch:B
12 2b3x:A 888 89 0.0945 0.0270 0.2697 5.3 2b3y:A, 2b3y:B
13 6cxt:B 372 40 0.0591 0.0403 0.3750 5.6 6cy8:B
14 5d9b:A 307 71 0.0709 0.0586 0.2535 9.4 5d9c:A, 5d9d:A, 5gtq:A, 5gx1:A, 5gx2:A, 5gx3:A, 5gx4:A, 5gx5:A, 5xfe:A
15 1fuj:A 221 29 0.0512 0.0588 0.4483 9.5 1fuj:B, 1fuj:C, 1fuj:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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