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BioLiP
>protein
KPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTIFFRADKTVDYETLMKVMDTLHQAGYLKIGLVG

The query sequence (length=73) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8vgc:A 75 73 1.0000 0.9733 1.0000 2.11e-49 8p9r:A, 8p9r:B, 8vgc:B, 8vgd:A, 8vgd:B
2 6pe2:A 456 32 0.1507 0.0241 0.3438 0.54 6p5a:A, 6p5a:G, 6pe2:G
3 4cmy:B 164 42 0.1781 0.0793 0.3095 2.1 4cmy:A, 4cmy:C, 4cmy:D, 4cmy:E, 4cmy:F, 4cmy:G, 4cmy:H, 4cmy:I, 4cmy:J, 4cmy:K, 4cmy:L, 4cmy:M, 4cmy:N, 4cmy:O, 4cmy:P, 4cmy:Q, 4cmy:R, 4cmy:S, 4cmy:T, 4cmy:U, 4cmy:V, 4cmy:W, 4cmy:X
4 6nzj:A 273 52 0.1918 0.0513 0.2692 4.9 6nzj:B
5 7xsh:A 548 40 0.2466 0.0328 0.4500 5.0 7xsh:B
6 5e6u:A 583 22 0.1507 0.0189 0.5000 6.5 5e6r:A, 5e6s:A, 5e6s:C, 5e6s:E
7 6dig:A 182 56 0.1781 0.0714 0.2321 6.7 7kei:A, 1uvq:A
8 6qfb:C 1011 29 0.1507 0.0109 0.3793 7.2

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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