Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KPVTLYDVAEYAGVSYQTVSRVVNQASHVSAKTREKVEAAMAELNYIPNRVAQQLAGKQSLLIGVATSSLALHAPSQIVA
AIKSRADQLGASVVVSMVERSGVEACKTAVHNLLAQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVSDQTPINSIIF
SHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLAGWHKYLTRNQIQPIAEREGDWSAMSGFQQTMQMLNEGIVPTA
MLVANDQMALGAMRAITESGLRVGADISVVGYDDTEDSSCYIPPLTTIKQDFRLLGQTSVDRLLQLSQGQAVKGNQLLPV
SLVKRKTT

The query sequence (length=328) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1lbg:A 357 328 1.0000 0.9188 1.0000 0.0 2bjc:A, 2bjc:B, 1cjg:A, 1cjg:B, 1efa:A, 1efa:B, 1efa:C, 1jwl:B, 1jwl:A, 1jwl:C, 2kei:A, 2kei:B, 2kej:A, 2kej:B, 2kek:A, 2kek:B, 1l1m:A, 1l1m:B, 1lbg:D, 1lbh:A, 1lbh:B, 1lbh:C, 1lbh:D, 1lcc:A, 1lcd:A, 1osl:A, 1osl:B, 2p9h:A, 2p9h:B, 2paf:A, 2paf:B, 2pe5:A, 2pe5:B, 2pe5:C, 4rzt:A, 4rzt:B, 4rzt:C, 4rzt:D, 1tlf:A, 1tlf:B, 1tlf:C, 1tlf:D
2 1jft:A 340 310 0.2988 0.2882 0.3161 1.59e-39 1bdh:A, 1bdi:A, 1jfs:A, 1jh9:A, 1pnr:A, 2pua:A, 2pub:A, 2puc:A, 2pud:A, 2pue:A, 2puf:A, 2pug:A, 1qp0:A, 1qp4:A, 1qp7:A, 1qpz:A, 1qqa:A, 1qqb:A, 1vpw:A, 1wet:A, 1zay:A
3 3oqo:A 333 332 0.3018 0.2973 0.2982 2.63e-34 3oqm:A, 3oqm:C, 3oqn:A, 3oqn:C, 3oqo:C
4 1rzr:G 332 334 0.2866 0.2831 0.2814 8.68e-34 2jcg:A, 2nzu:G, 2nzv:G, 1rzr:C, 1rzr:A, 1rzr:D, 1sxg:B, 1zvv:A, 1zvv:B, 1zvv:G
5 5ysz:A 327 328 0.3049 0.3058 0.3049 1.54e-27
6 4rk0:D 269 219 0.1860 0.2268 0.2785 7.93e-18 4rk0:A, 4rk0:B, 4rk0:C
7 4rk1:D 269 217 0.2043 0.2491 0.3088 4.79e-15 4rk1:A, 4rk1:B, 4rk1:C, 4rk1:E, 4rk1:F
8 3k4h:A 282 275 0.2134 0.2482 0.2545 2.77e-14 3k4h:B
9 3ctp:A 266 268 0.1768 0.2180 0.2164 5.20e-13 3ctp:B
10 3gyb:A 261 166 0.1494 0.1877 0.2952 4.47e-12 3gyb:B
11 3tb6:A 283 255 0.1890 0.2191 0.2431 8.75e-11 3tb6:B
12 2ioy:A 274 253 0.2134 0.2555 0.2767 2.87e-10 2ioy:B
13 4zjp:A 270 142 0.1250 0.1519 0.2887 5.19e-09
14 4rk6:A 270 162 0.1250 0.1519 0.2531 3.14e-08 4rk6:B, 4rk7:A, 4rk7:B
15 5ocp:A 302 214 0.1738 0.1887 0.2664 2.16e-07 5ocp:B
16 4rkr:A 274 93 0.0976 0.1168 0.3441 7.88e-07 4rkr:B, 4rkr:C, 4rkr:D
17 1dbp:A 271 207 0.1555 0.1882 0.2464 8.81e-07 1drj:A, 1drk:A, 2dri:A, 2gx6:A
18 7e7m:C 284 225 0.1463 0.1690 0.2133 1.14e-06 7e7m:A, 7e7m:B, 7e7m:D
19 6hbd:A 305 213 0.1738 0.1869 0.2676 1.29e-06 6hb0:A, 6hb0:B, 6hbd:B, 6hbm:A, 6hbm:B, 6hyh:A, 6hyh:B
20 5ibq:A 287 202 0.1311 0.1498 0.2129 1.32e-06 4ry0:A
21 4rk5:A 275 161 0.1159 0.1382 0.2360 7.64e-06 4rk4:A
22 2rjo:A 322 199 0.1799 0.1832 0.2965 1.72e-05
23 2fn8:A 292 295 0.2226 0.2500 0.2475 2.78e-05
24 4rxm:A 291 104 0.1006 0.1134 0.3173 3.08e-05 4rxm:B
25 5dte:B 287 205 0.1494 0.1707 0.2390 4.96e-04 5dte:A, 5dte:C, 5dte:D
26 4rsm:A 315 140 0.1250 0.1302 0.2929 0.002 4rsm:B, 4rsm:C, 4rsm:D
27 4xxh:A 255 116 0.0854 0.1098 0.2414 0.002 4xxh:B
28 7ce1:K 333 325 0.2134 0.2102 0.2154 0.006 7cdx:A, 7cdx:B, 7ce1:A, 7ce1:B, 7ce1:C, 7ce1:D, 7ce1:G, 7ce1:H, 7ce1:L, 7ce1:O, 7ce1:P
29 4yo7:A 287 225 0.1555 0.1777 0.2267 0.008
30 4rs3:A 315 139 0.1189 0.1238 0.2806 0.008 5hko:A
31 4wut:A 290 144 0.1067 0.1207 0.2431 0.009
32 7ce1:T 292 65 0.0610 0.0685 0.3077 0.009
33 7ce1:S 259 60 0.0610 0.0772 0.3333 0.009
34 8fxu:A 310 90 0.0884 0.0935 0.3222 0.010
35 1gud:A 288 110 0.0884 0.1007 0.2636 0.016 1rpj:A, 8wl7:A, 8wl9:A, 8wlb:A
36 4ry9:A 297 279 0.2073 0.2290 0.2437 0.017 4ry9:B
37 4irx:A 296 87 0.0793 0.0878 0.2989 0.019 4irx:B
38 2vk2:A 296 63 0.0610 0.0676 0.3175 0.086
39 3ma0:A 313 276 0.2012 0.2109 0.2391 0.15 3m9x:A, 3ma0:B, 3ma0:C
40 3ksm:A 276 89 0.0640 0.0761 0.2360 0.26 3ksm:B
41 5j92:B 259 39 0.0396 0.0502 0.3333 0.85 5j92:A, 5j92:C, 5j92:D
42 3pmo:A 357 75 0.0671 0.0616 0.2933 1.8 6uec:A
43 2x5d:D 380 92 0.0732 0.0632 0.2609 2.2 2x5d:A
44 3tw1:A 222 43 0.0427 0.0631 0.3256 2.3
45 3wnb:A 361 41 0.0457 0.0416 0.3659 3.8 3wnc:A
46 6j54:a 223 98 0.0762 0.1121 0.2551 4.8 6j5a:a, 6j5i:a, 6j5k:Ba, 6j5k:Ca, 6zmr:a
47 8evb:B 432 75 0.0610 0.0463 0.2667 6.9
48 6uld:A 428 58 0.0579 0.0444 0.3276 7.6 6uld:B
49 1ihf:B 94 59 0.0549 0.1915 0.3051 9.1 2ht0:B, 5j0n:J, 5j0n:L, 1ouz:B, 1owf:B, 1owg:B, 5wfe:L

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218