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BioLiP
>protein
KPVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNKFLRSVGDGETVEFDVVEGEKGAEATNVTGPG

The query sequence (length=75) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7f3i:A 93 78 1.0000 0.8065 0.9615 1.01e-47 7f3i:C, 7f3i:E, 7f3j:A, 7f3j:C, 7f3j:E, 7f3j:G, 7f3k:A, 7f3l:A
2 6a6j:A 90 76 0.9200 0.7667 0.9079 3.47e-44 6a6j:C, 6a6l:A, 6ktc:A, 6kug:A, 6lmr:A, 5yts:A, 5ytt:A, 5ytv:A, 5ytx:A
3 5udz:A 139 73 0.4400 0.2374 0.4521 2.17e-14 8ops:B, 8opt:B, 8ost:B, 3trz:A, 3trz:B, 3trz:C, 3trz:D, 3trz:E, 3trz:F, 3ts0:A, 3ts0:B, 3ts2:A, 3ts2:B, 5udz:B
4 4a75:A 89 73 0.4400 0.3708 0.4521 2.19e-13 4a75:C, 4a75:E, 4a75:G, 4a76:A, 4a76:G, 4a76:C, 4a76:E, 4alp:A, 4alp:D
5 2es2:A 67 63 0.3867 0.4328 0.4603 1.05e-12 3pf4:B, 3pf5:B, 3pf5:A
6 7ot5:B 66 65 0.3733 0.4242 0.4308 3.33e-12
7 1c9o:A 66 63 0.3867 0.4394 0.4603 2.25e-11 1c9o:B, 2hax:A, 2hax:B
8 7oii:B 39 36 0.2267 0.4359 0.4722 1.00e-06
9 5lj3:C 882 59 0.2400 0.0204 0.3051 0.60 6exn:C, 5gam:C, 5gan:C, 5lj5:C, 5lqw:B, 5mps:C, 5mq0:C, 5nrl:C
10 6rxd:A 509 53 0.2000 0.0295 0.2830 0.78 6rxd:B, 6rxe:A, 6rxe:B, 6rxf:A, 6rxf:B, 6rxg:A, 6rxg:B
11 7zhh:A 219 55 0.1733 0.0594 0.2364 7.7
12 8fqc:A 168 30 0.1600 0.0714 0.4000 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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