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BioLiP
>protein
KPTITKQELYSLVAADTQLNKALIERIFTSQQKIIQNALKHNQEVIIPPGIKFTVVTVKAKPARQGHNPATGEPIQIKAK
PEHKAVKIRALKPVHDMLN

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6lmj:A 99 99 1.0000 1.0000 1.0000 9.85e-68 6lmj:B
2 4qju:A 90 99 0.3030 0.3333 0.3030 1.26e-04 4qju:B
3 8flj:G 98 74 0.2424 0.2449 0.3243 1.74e-04 8flj:E
4 5yh1:A 439 52 0.1515 0.0342 0.2885 0.007
5 1p71:A 94 76 0.2020 0.2128 0.2632 0.019 1p51:A, 1p51:B, 1p51:D, 1p51:C, 1p71:B, 1p78:A, 1p78:B
6 6o8q:B 91 89 0.2525 0.2747 0.2809 0.054 6o8q:G, 6o8q:H, 6o8q:F, 4yf0:B, 4yfh:B
7 2iie:A 204 72 0.2121 0.1029 0.2917 0.18 2ht0:A, 1ihf:A, 2iif:A, 5j0n:I, 5j0n:K, 1ouz:A, 1owf:A, 1owg:A, 5wfe:K
8 1ihf:B 94 70 0.1919 0.2021 0.2714 1.6 2ht0:B, 5j0n:J, 5j0n:L, 1ouz:B, 1owf:B, 1owg:B, 5wfe:L
9 8flj:F 94 78 0.2020 0.2128 0.2564 4.0 8flj:H
10 8eug:Q 186 26 0.1010 0.0538 0.3846 4.9 8esq:Q, 8esr:Q, 8etc:Q, 8etg:Q, 8eth:Q, 8eti:Q, 8etj:Q, 8eui:Q, 8eup:Q, 8euy:Q, 8ev3:Q
11 8y6b:D 517 26 0.1212 0.0232 0.4615 9.1 8hpy:D, 8hpy:E, 8hq0:D, 8hq0:E, 8hq0:F, 8hq1:D, 8hq1:E, 8hq1:F, 8hq2:D, 8hq2:E, 5y2z:J, 5y2z:B, 5y2z:D, 5y2z:F, 5y2z:H, 5y2z:L, 5y31:B, 5y31:D, 8y6b:F, 8y6b:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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