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BioLiP
>protein
KPSLSQLKSQVPYPQIIEWYDCDARYPGLLASIKCTKNVIPVPSHWQSKKEYLSGRSLLGKRPFELPDIIKKTNIEQMRS
TLPEKSLKEASRARVQPKMGALDLDYKKLHDVFFKIGANWKPDHLLCFGDVYYENRNLFEETNWKRMVDHK

The query sequence (length=151) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7dco:2 220 151 1.0000 0.6864 1.0000 4.28e-111 6g90:Q, 5gm6:H, 5nrl:Q, 5zwm:2
2 7dvq:2 216 148 0.4305 0.3009 0.4392 2.50e-36 7abh:T, 7abi:T, 8y7e:2, 5z56:2, 5z57:2, 5z58:2
3 8i0r:2 250 140 0.4106 0.2480 0.4429 1.41e-35 8ch6:E, 6ff4:8, 6ff7:8, 8i0p:2, 8i0s:2, 8i0t:2, 8i0u:2, 8i0v:2, 8qo9:B2, 7qtt:E, 6qx9:B2, 8qxd:B2, 8r08:B2, 8r0a:B2, 8r0b:B2
4 7vpx:2 187 136 0.3311 0.2674 0.3676 2.20e-23 7evo:2, 8hk1:2, 7onb:I, 7q4o:B, 7q4p:B, 6y50:8
5 7q3l:B 110 142 0.3046 0.4182 0.3239 1.30e-17
6 8kdb:A 2117 139 0.1921 0.0137 0.2086 0.88 8kdc:A
7 7yh5:B 177 50 0.0927 0.0791 0.2800 2.0 7yh5:A, 7yh5:C, 7yh5:E, 7yh5:F
8 6otw:B 152 60 0.0993 0.0987 0.2500 3.9 6otx:B, 6oty:B, 3pt7:B, 3pt8:B
9 4v8m:BM 138 37 0.0795 0.0870 0.3243 7.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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