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BioLiP
>protein
KPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAEEVFEDIITQYNGKYILAVEGNPPLGE
QGMFCISSGRPFIEKLKRAAAGASAIIAWGTCASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYM
VTFDRLPDVDRMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACSSTRWNDGVSFPI
QSGHGCLGCAENGFWDRGSFYSRV

The query sequence (length=264) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4gd3:S 304 264 0.9962 0.8651 0.9962 0.0 5a4f:S, 5a4f:T, 5a4i:S, 5a4i:T, 5a4m:S, 5a4m:T, 5adu:S, 5adu:T, 6fpi:S, 6fpi:T, 6fpo:S, 6fpo:T, 6fpw:S, 6fpw:T, 6g7r:S, 6g7r:T, 6g94:S, 6g94:T, 6g94:Q, 6g94:R, 6gal:S, 6gal:T, 4gd3:T, 4gd3:Q, 4gd3:R, 5jrd:S, 5jrd:T, 5lmm:S, 5lmm:T, 5lry:S, 5lry:T, 6rp2:S, 6rp2:T, 4ue3:SSS, 4ue3:TTT, 3uqy:S, 3uqy:T, 3usc:S, 3usc:T, 3use:S, 3use:T
2 4c3o:B 263 263 0.7992 0.8023 0.8023 1.11e-162 4c3o:D, 4c3o:F
3 3ayx:B 273 265 0.7424 0.7179 0.7396 2.19e-156 3ayx:D, 3ayz:B, 3ayz:D, 5d51:S, 4iub:S, 4iuc:S, 4iud:S, 5mdj:S, 5mdk:S, 5mdl:S, 7odg:S, 7odh:S, 8pou:S, 8pov:S, 8pow:S, 8pox:S, 8poz:S, 3rgw:S, 4ttt:S, 5y34:B, 5y34:D
4 3myr:C 269 263 0.4811 0.4721 0.4829 1.58e-87 3myr:A, 3myr:E, 3myr:G
5 1frv:A 262 265 0.4205 0.4237 0.4189 2.72e-73 1frv:C, 2frv:S, 2frv:A, 2frv:C, 2frv:E, 2frv:G, 2frv:I, 1yq9:A, 1yq9:B
6 4urh:C 264 264 0.4583 0.4583 0.4583 4.44e-70 3cur:A, 3cur:B, 3cur:C, 3cus:A, 3cus:B, 3cus:C, 1frf:S, 3h3x:A, 3h3x:B, 3h3x:C, 4ucq:A, 4ucq:B, 4ucq:C, 4ucw:A, 4ucw:B, 4ucw:C, 4ucx:A, 4ucx:B, 4ucx:C, 4ud2:A, 4ud2:B, 4ud2:C, 4ud6:A, 4ud6:B, 4ud6:C, 4ue2:A, 4ue2:B, 4ue2:C, 4ue6:A, 4ue6:B, 4ue6:C, 4ueq:A, 4ueq:B, 4ueq:C, 4ueq:D, 4ueq:E, 4ueq:F, 4uew:A, 4uew:B, 4uew:C, 4upe:A, 4upe:B, 4upe:C, 4upv:A, 4upv:B, 4uql:A, 4uql:B, 4uqp:A, 4uqp:B, 4urh:A, 4urh:B, 1yqw:A, 1yqw:B, 1yqw:C, 1yrq:A, 1yrq:B, 1yrq:C, 1yrq:D, 1yrq:F, 1yrq:G
7 1h2a:S 267 258 0.4091 0.4045 0.4186 1.87e-67 1h2r:S, 4u9h:S, 4u9i:S, 1ubh:S, 1ubj:S, 1ubk:S, 1ubl:S, 1ubm:S, 1ubo:S, 1ubr:S, 1ubt:S, 1ubu:S, 8w6x:S, 1wuh:S, 1wui:S, 1wuj:S, 1wuk:S, 1wul:S, 5xle:S, 5xlf:S, 5xlg:S, 5xlh:S, 5y4n:S
8 5xvd:S 269 253 0.4318 0.4238 0.4506 3.24e-67 6ehq:S, 6ehq:T, 6ehs:S, 6ehs:T, 6en9:S, 6en9:T, 6g7m:S, 6g7m:T, 6gam:S, 6gam:T, 6gan:S, 6gan:T, 7nem:S, 7nem:T, 6syo:SSS, 6syo:TTT, 6syx:SSS, 6syx:TTT, 6szd:SSS, 6szd:TTT, 6szk:SSS, 6szk:TTT, 7vxq:B, 7vxq:D, 5xvb:S, 5xvb:T, 5xvc:S, 5xvc:T, 5xvd:T
9 1e3d:A 262 256 0.4167 0.4198 0.4297 1.88e-65 1e3d:C
10 4kl8:S 279 280 0.3523 0.3333 0.3321 2.77e-50 1cc1:S, 4kl8:T, 4kn9:S, 4kn9:T, 4ko1:S, 4ko1:T, 4ko2:S, 4ko2:T, 4ko3:S, 4ko3:T, 4ko4:S, 4ko4:T
11 5jsh:A 283 281 0.3447 0.3216 0.3238 3.96e-48 5jsk:A, 5jsu:A, 5jsy:A, 5jt1:A, 6rtp:A, 6ru9:A, 6ruc:A, 2wpn:A, 6z7r:A, 6z7r:C, 6z8j:A, 6z8j:C, 6z8m:A, 6z8o:A, 6z8o:C, 6z9g:A, 6z9g:C, 6z9g:E, 6z9g:G, 6z9o:A, 6za1:A, 3ze6:A, 3ze7:A, 3ze8:A, 3ze9:A, 3zea:A
12 8dqv:B 322 274 0.3068 0.2516 0.2956 1.67e-27 8dqv:D, 7utd:B, 7utd:D, 7utd:F, 7utd:H, 7utd:J, 7utd:L, 7utd:N, 7utd:P, 7uur:D, 7uur:G, 7uus:B, 7uus:D, 7uus:F, 7uus:H, 7uus:J, 7uus:L, 7uus:N, 7uus:P
13 5aa5:A 345 282 0.2614 0.2000 0.2447 2.47e-17 5aa5:B, 5aa5:D, 5aa5:F, 5aa5:H, 5aa5:M
14 4omf:G 231 91 0.0947 0.1082 0.2747 1.47e-04 4ci0:B, 3zfs:B
15 6qgr:G 253 127 0.1098 0.1146 0.2283 3.67e-04 6qgt:G, 6qii:G
16 7md2:B 458 130 0.1288 0.0742 0.2615 0.076
17 6cp3:C 508 130 0.1288 0.0669 0.2615 0.089 4b2q:A, 4b2q:B, 4b2q:C, 4b2q:a, 4b2q:b, 4b2q:c, 6b8h:K, 6b8h:B, 6b8h:C, 6b8h:n, 6b8h:W, 6b8h:X, 6cp3:A, 6cp3:B, 6cp6:A, 6cp6:B, 6cp6:C, 8f29:A, 8f29:B, 8f29:C, 8f2k:A, 8f2k:B, 8f2k:C, 8f39:A, 8f39:B, 8f39:C, 8fl8:A, 8fl8:B, 8fl8:C, 2hld:A, 2hld:B, 2hld:C, 2hld:J, 2hld:K, 2hld:L, 2hld:S, 2hld:T, 2hld:U, 7md2:A, 7md2:C, 7md3:A, 7md3:B, 7md3:C, 3oe7:A, 3oe7:B, 3oe7:C, 3oe7:J, 3oe7:K, 3oe7:L, 3oe7:S, 3oe7:T, 3oe7:U, 3oee:A, 3oee:B, 3oee:C, 3oee:J, 3oee:K, 3oee:L, 3oee:S, 3oee:T, 3oee:U, 3oeh:A, 3oeh:B, 3oeh:C, 3oeh:J, 3oeh:K, 3oeh:L, 3oeh:S, 3oeh:T, 3oeh:U, 3ofn:A, 3ofn:B, 3ofn:C, 3ofn:J, 3ofn:K, 3ofn:L, 3ofn:S, 3ofn:T, 3ofn:U, 7tjs:A, 7tjs:B, 7tjs:C, 7tjt:A, 7tjt:B, 7tjt:C, 7tju:A, 7tju:B, 7tju:C, 7tjv:A, 7tjv:B, 7tjv:C, 7tjw:A, 7tjw:B, 7tjw:C, 7tjx:A, 7tjx:B, 7tjx:C, 2wpd:A, 2wpd:B, 2wpd:C, 2xok:A, 2xok:B, 2xok:C, 3zia:A, 3zia:B, 3zia:C, 3zia:K, 3zia:L, 3zia:M, 3zry:A, 3zry:B, 3zry:C
18 5fl7:A 485 196 0.1856 0.1010 0.2500 0.61 5fl7:B, 5fl7:C
19 7aaq:A 487 64 0.0871 0.0472 0.3594 0.82 7aar:A, 6h7d:A
20 7awt:B 141 115 0.1023 0.1915 0.2348 1.6
21 6cfw:J 143 49 0.0682 0.1259 0.3673 2.0
22 5odc:E 298 178 0.1364 0.1208 0.2022 2.1 5odc:K, 5odh:E, 5odh:K, 5odi:E, 5odi:K, 5odq:E, 5odq:K, 5odr:E, 5odr:K
23 7l7b:D 1148 53 0.0644 0.0148 0.3208 2.9
24 7z7s:B 213 75 0.0795 0.0986 0.2800 4.0 7nyr:B, 7nyu:B, 7nyv:B, 7p61:B, 7p62:B, 7p63:B, 7p64:B, 7p7c:B, 7p7j:B, 7p7k:B, 7p7l:B, 7p7m:B, 7z7r:B, 7z7t:B, 7z7v:B, 7z80:B, 7z83:B, 7z84:B
25 7p69:B 169 75 0.0795 0.1243 0.2800 4.2 7nz1:B, 7p7e:B, 7zc5:B, 7zci:B
26 7pt4:B 584 61 0.0720 0.0325 0.3115 4.5 7pt1:A, 7pt1:B, 7pt2:A, 7pt2:B, 7pt3:A, 7pt3:B, 7pt4:A
27 4lv8:A 360 36 0.0455 0.0333 0.3333 5.0 4lv5:A, 3q60:A
28 7p01:A 572 62 0.0720 0.0332 0.3065 5.1 7p01:B, 7p07:A, 7p07:B
29 3v8x:A 853 52 0.0682 0.0211 0.3462 5.7
30 7q5y:F 135 39 0.0606 0.1185 0.4103 6.2 7q5y:L, 7q5y:R, 7q5y:X
31 1kza:1 115 34 0.0455 0.1043 0.3529 7.9 1kza:2, 1kzb:1, 1kzb:2, 1kzc:1, 1kzc:2, 1kzd:1, 1kzd:2, 1kze:1, 1kze:2, 1rdi:1, 1rdi:2, 1rdj:1, 1rdj:2, 1rdk:1, 1rdk:2, 1rdl:1, 1rdl:2, 1rdm:1, 1rdm:2, 1rdn:1, 1rdn:2, 1rdo:1, 1rdo:2
32 8ceu:f 121 49 0.0455 0.0992 0.2449 8.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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