Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KPRGFARGLEPERIIGATDSSGELMFLMKWKNSDEADLVPAKEANVKCPQVVISFYEERLTWHSYP

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3q6s:B 67 66 1.0000 0.9851 1.0000 4.02e-46 3q6s:A, 3q6s:C, 3q6s:D, 5t1g:A
2 6hw2:B 69 66 0.8939 0.8551 0.8939 2.92e-41 8jzw:C, 8jzw:D, 8jzw:A, 8jzw:B, 5t1i:A, 5t1i:B
3 8uxq:A 170 64 0.8182 0.3176 0.8438 4.66e-38 3fdt:A
4 8uxq:A 170 44 0.1818 0.0706 0.2727 0.18 3fdt:A
5 1guw:A 73 42 0.1970 0.1781 0.3095 0.007 6d07:A, 6d07:B, 6d08:A, 6d08:B
6 3tzd:A 58 44 0.1818 0.2069 0.2727 0.008 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
7 2rvn:A 83 44 0.1818 0.1446 0.2727 0.046
8 6asz:A 53 44 0.1667 0.2075 0.2500 3.4 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
9 5ucr:A 271 44 0.1818 0.0443 0.2727 3.8 5kwv:A, 5kwv:B, 5ucr:B
10 8x2i:A 2303 21 0.1212 0.0035 0.3810 4.0
11 8x2h:A 2363 21 0.1212 0.0034 0.3810 4.0 8jb5:A, 2vkd:A, 2vkd:B, 2vkd:C, 2vkh:A, 2vkh:B, 2vkh:C, 2vl8:A, 2vl8:B, 2vl8:C
12 2jkb:A 661 45 0.2424 0.0242 0.3556 4.3 4fow:A, 4foy:A, 4fp2:A, 4fp3:A, 4fpc:A, 4fpe:A, 4fpf:A, 4fpg:A, 4fph:A, 4fpj:A, 4fpk:A, 4fpl:A, 4fpo:B, 4fpy:A, 4fq4:A, 2vw1:A, 2vw2:A, 4xe9:A, 4xhb:A, 4xhx:A, 4xil:A, 4xj9:A, 4xja:A, 4xju:A, 4xjw:A, 4xma:A, 4xog:A, 4xyx:A
13 3kvg:B 382 31 0.1818 0.0314 0.3871 7.5 3kvg:A, 3l4i:A, 3l4i:B
14 8y9c:B 1609 21 0.1212 0.0050 0.3810 8.4
15 6dwo:A 712 30 0.1818 0.0169 0.4000 8.9 6dwo:B, 6dwo:C, 6dwo:D, 7fe1:A, 7fe1:B, 7fe1:C, 7fe1:D, 7fe2:A, 7fe2:B, 7fe2:C, 7fe2:D
16 8hfc:A 276 19 0.1061 0.0254 0.3684 9.2
17 5g3z:A 215 51 0.1818 0.0558 0.2353 9.5 5g40:A, 5g41:A
18 3qo2:A 61 48 0.1667 0.1803 0.2292 9.6 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218