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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KPNVVGRDADGNVTVDGRSYPMAESVVATESTIHRSMKEMAQTLANAYKTLKHRDTHNKGNSALAPITDENPLIIISVLK
GSYIFTADMVRYLGDCGLPNVVDFIRINLRFTELTGKHVLIMEDIADTGRTMKLLVEKIRREYRPASLKVCVLVDKPGGR
VVDFKPEFVCLTAPTRYVVGYGFEVNDRYRNYRHVFVLKPEYAKRYPSKL

The query sequence (length=210) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6mxc:C 220 220 0.9952 0.9500 0.9500 3.64e-153 6aqo:A, 6aqo:B, 6aqo:C, 6aqo:D, 6aqo:E, 6aqo:F, 6ar9:A, 6ar9:B, 6ar9:C, 6ar9:D, 6ar9:E, 6ar9:F, 6mxb:A, 6mxb:B, 6mxb:C, 6mxb:D, 6mxb:E, 6mxb:F, 6mxc:A, 6mxc:B, 6mxc:D, 6mxc:E, 6mxc:F, 6mxd:A, 6mxd:B, 6mxd:C, 6mxd:D, 7scr:A, 7scr:C, 7scr:B, 7scr:D, 7scr:E, 7scr:F
2 8fx3:B 223 224 0.6238 0.5874 0.5848 1.66e-96 8fwy:A, 8fwy:B, 8fwz:A, 8fwz:B, 8fx0:A, 8fx0:B, 8fx1:A, 8fx1:B, 8fx2:A, 8fx2:B, 8fx3:A
3 6aps:A 185 191 0.3905 0.4432 0.4293 5.70e-47 6aps:B, 6apt:A, 6apt:B, 6apu:A, 6apu:B, 6apv:A, 6apv:B, 6apv:C, 6apv:D, 5jsq:A, 5jsq:B, 5jv5:A, 5jv5:B, 5k51:A, 5k51:B, 5k51:C, 5k51:D, 5kam:A, 5kam:C, 5kap:A, 5kap:B, 6mxg:A, 6mxg:B, 7sb7:A, 7sb7:B, 8tr1:A, 8tr1:B, 8tr1:C, 8tr1:D, 8ts4:A, 8ts4:B
4 1p17:B 204 203 0.3810 0.3922 0.3941 4.94e-35 1i0i:A, 1i0i:B, 1i0l:A, 1i0l:B, 1i13:A, 1i13:B, 1i14:A, 1i14:B, 1p17:A, 1p17:C, 1p17:D, 1p18:A, 1p18:B, 1p19:A, 1p19:B, 1p19:C, 1p19:D, 1tc1:A, 1tc1:B, 1tc2:A, 1tc2:B
5 7cmj:A 184 199 0.3286 0.3750 0.3467 6.74e-33 1pzm:A, 1pzm:B
6 5brn:B 194 142 0.2714 0.2938 0.4014 7.15e-26 5bsk:A, 5bsk:B, 5bsk:C, 5bsk:D, 4kn6:A, 8tpy:A, 8tpy:B, 8tpy:C, 8tpy:D
7 1bzy:A 214 158 0.2667 0.2617 0.3544 3.14e-23 6bnj:A, 6bnj:B, 6bnj:C, 6bnj:D, 5brn:A, 5brn:C, 5brn:D, 1bzy:B, 1bzy:C, 1bzy:D, 1d6n:A, 1d6n:B, 3gep:A, 3gep:B, 3ggc:A, 3ggc:B, 3ggj:A, 3ggj:B, 5hia:A, 5hia:B, 5hia:C, 5hia:D, 1hmp:A, 1hmp:B, 4ijq:A, 4ijq:B, 4ijq:C, 4ijq:D, 4rab:A, 4rab:B, 4rab:C, 4rab:D, 4rac:A, 4rac:B, 4rac:C, 4rac:D, 4rad:A, 4rad:B, 4rad:C, 4rad:D, 4rad:E, 4rad:F, 4rad:G, 4rad:H, 4ran:A, 4ran:B, 4ran:C, 4ran:D, 4rao:A, 4rao:B, 4rao:C, 4rao:D, 4raq:A, 4raq:B, 4raq:C, 4raq:D, 7san:A, 7san:B, 7san:C, 7san:D, 8tpv:A, 8tpv:B, 8tpv:C, 8tpv:D, 5w8v:A, 5w8v:B, 5w8v:C, 5w8v:D
8 2vfa:B 205 149 0.2571 0.2634 0.3624 5.38e-22 2vfa:A
9 1hgx:A 164 180 0.2619 0.3354 0.3056 5.73e-21
10 4qyi:B 171 135 0.2143 0.2632 0.3333 6.34e-21 4qyi:A, 4qyi:C, 4qyi:D, 4qyi:E
11 2geb:A 184 194 0.2667 0.3043 0.2887 6.70e-21 1r3u:A, 1r3u:B, 1yfz:A, 1yfz:B
12 3kb8:A 201 194 0.3000 0.3134 0.3247 2.86e-20 6d9r:A, 6d9r:B, 6d9s:A, 6d9s:B, 3h83:A, 3h83:B, 3kb8:B
13 2jbh:B 213 156 0.2429 0.2394 0.3269 4.90e-18 2jbh:A
14 6igs:B 167 135 0.2048 0.2575 0.3185 1.60e-17 6igs:A, 6igs:C, 6igs:D
15 5kny:B 187 193 0.2381 0.2674 0.2591 8.66e-17 5knp:A, 5knp:B, 5knp:C, 5knp:D, 5knq:A, 5knq:B, 5knq:C, 5knq:D, 5kny:A, 5kny:C, 5kny:D, 4rht:A, 4rht:B, 4rht:C, 4rht:D, 4rhu:A, 4rhu:B, 4rhu:C, 4rhu:D, 4rhu:E, 4rhu:F, 4rhx:A, 4rhx:B, 4rhx:C, 4rhx:D, 4rhy:A, 4rhy:B, 4rhy:C, 4rhy:D
16 5knx:B 176 141 0.2190 0.2614 0.3262 9.67e-17 1g9s:A, 1g9s:B, 1g9t:A, 1g9t:B, 1grv:B, 1grv:A, 1j7j:A, 1j7j:B, 5knr:A, 5knr:B, 5kns:A, 5kns:B, 5knt:A, 5knt:B, 5knu:A, 5knu:B, 5knv:A, 5knv:B, 5knx:A
17 5ipf:A 201 140 0.2238 0.2338 0.3357 3.61e-16 5ipf:B, 5ipf:C, 5ipf:D
18 4pfq:C 184 196 0.2381 0.2717 0.2551 1.42e-15 4pfq:A, 4pfq:B, 4pfq:D, 4pfq:E, 4pfq:F, 4pfq:G, 4pfq:H
19 3acc:A 166 133 0.2190 0.2771 0.3459 2.01e-15 3acd:A
20 6bo7:A 220 146 0.1952 0.1864 0.2808 1.66e-11 6bo7:B, 6bo7:C, 6bo7:D, 6bo7:E, 6bo7:F, 6bo7:G, 6bo7:H, 6bo7:I, 6bo7:J, 6bo7:K, 6bo7:L
21 3ozf:B 234 95 0.1524 0.1368 0.3368 2.96e-11 1cjb:A, 1cjb:B, 1cjb:C, 1cjb:D, 3ozf:A, 3ozf:C, 3ozf:D, 3ozg:A, 3ozg:B, 3ozg:C, 3ozg:D, 7tux:A, 7tux:B, 7tux:C, 7tux:D
22 1fsg:A 233 90 0.1476 0.1330 0.3444 1.90e-10 1dbr:A, 1dbr:B, 1dbr:D, 1fsg:C, 1qk3:A, 1qk3:B, 1qk3:C, 1qk3:D, 1qk4:A, 1qk4:B, 1qk4:C, 1qk4:D, 1qk5:A, 1qk5:B
23 5esw:A 190 152 0.2048 0.2263 0.2829 4.25e-09 5esx:A, 5esx:B
24 4trb:B 209 72 0.1048 0.1053 0.3056 0.001 4trc:A, 4trc:B, 4ts5:A, 4ts5:B, 4ts7:A, 4ts7:B
25 2igb:B 173 62 0.0952 0.1156 0.3226 0.001 2igb:A, 4p83:A, 4p83:B, 4p83:C, 4p83:D, 1xz8:A, 1xz8:B, 1xzn:A, 1xzn:B
26 4p86:A 177 63 0.0857 0.1017 0.2857 0.007 4p86:B, 4p86:C, 4p86:D
27 4zfn:B 177 52 0.0952 0.1130 0.3846 0.008 5bqp:A, 5bqp:B, 5bqp:C, 5bqp:D, 4z1o:A, 4z1o:B, 4zfn:A
28 5iao:A 171 57 0.0762 0.0936 0.2807 0.038 5iao:C, 5iao:F
29 1dqn:A 230 146 0.1381 0.1261 0.1986 0.27 1dqn:B, 1dqp:A, 1dqp:B
30 3fsl:A 397 143 0.1667 0.0882 0.2448 0.51 3fsl:B, 3fsl:C, 3fsl:D, 3fsl:E, 3fsl:F, 3tat:A, 3tat:B, 3tat:C, 3tat:D, 3tat:E, 3tat:F
31 4gvh:A 341 75 0.1095 0.0674 0.3067 0.53 4gvh:B, 4gvi:B, 4hzm:A, 4hzm:B
32 4zev:A 290 66 0.1000 0.0724 0.3182 1.5 4qjb:A, 4qjb:B, 4zev:B, 4zew:A, 4zew:B, 4zex:A, 4zex:B
33 2yyj:A 476 79 0.1048 0.0462 0.2785 1.8 2yyi:A, 2yyl:A, 2yym:A
34 3d3s:A 159 45 0.0667 0.0881 0.3111 5.5 3d3s:C, 3d3s:D, 3d3s:B
35 5go9:A 3423 87 0.0905 0.0056 0.2184 7.9 5go9:B, 5go9:C, 5go9:D, 5goa:A, 5goa:B, 5goa:C, 5goa:D
36 6jgz:B 3485 87 0.0905 0.0055 0.2184 7.9 6jg3:A, 6jg3:B, 6jg3:C, 6jg3:D, 6jgz:D, 6jgz:F, 6jgz:H, 6jh6:B, 6jh6:D, 6jh6:F, 6jh6:H, 6jhn:A, 6jhn:C, 6jhn:E, 6jhn:G, 6ji0:A, 6ji0:C, 6ji0:E, 6ji0:G, 6jrr:A, 6jrr:C, 6jrr:E, 6jrr:G
37 6jrs:A 3488 87 0.0905 0.0054 0.2184 7.9 6jrs:D, 6jrs:G, 6jrs:J
38 6jiy:A 3521 87 0.0905 0.0054 0.2184 7.9 6ji8:A, 6ji8:D, 6ji8:G, 6ji8:J, 6jii:B, 6jii:E, 6jii:H, 6jii:K, 6jiu:A, 6jiu:D, 6jiu:G, 6jiu:J, 6jiy:D, 6jiy:G, 6jiy:J, 6jv2:A, 6jv2:C, 6jv2:E, 6jv2:G
39 7b2e:A 548 50 0.0571 0.0219 0.2400 9.7 7ayg:A, 7ayg:B, 7ayg:C, 7ayg:D, 7ayg:E, 7ayg:F, 7ayg:G, 7ayg:H, 7b2e:B, 7b2e:C, 7b2e:D, 7b2e:E, 7b2e:F, 7b2e:G, 7b2e:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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