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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KPLRVDLILENTSKVPAPKDVLAHQVPNAKKLRRKEQLWEKLAKQDTVERPFYDLWASDNPLDRPLVGQDEFFLEQTKKK
GVKRPARLHTKPSQAPAVEVAPAGASYNPSFEDHQTLLSAAHEVELQRQKEAEKLERQLALPATEQAATQESTFQELCEG
LLEESDTTEKKTEQQRRREKAVHRLRVQQAALRAARLRHQELFRLRGIKAQVALRLAELARRQRRRQARREAEADKPRRL
GRLKYQAPDIDVQLSSELTDSLRTLKPEGNILRDRFKSFQRRNMIEPRERAKFKRKYKVKLVEKRAFREIQL

The query sequence (length=312) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8fl2:NL 360 328 0.9936 0.8611 0.9451 0.0 8fl3:NL
2 8inf:w 388 327 0.9712 0.7809 0.9266 0.0 8fkz:NL, 8fl4:NL, 8fl6:NL, 8fl7:NL, 8fla:NL, 8flb:NL, 8fld:NL, 8fle:NL, 8ine:w, 8ipx:f, 8ipy:f, 8ir3:f
3 8pvk:Ce 313 266 0.2821 0.2812 0.3308 6.25e-18 8pv1:Ce, 8pv3:Ce, 8pv4:Ce, 8pv6:Ce, 8pv7:Ce, 8pvl:Ce
4 7u0h:q 189 224 0.2019 0.3333 0.2812 4.16e-10
5 3jct:q 183 99 0.1122 0.1913 0.3535 1.97e-09 7btb:q, 6m62:q, 7ohq:q, 7uoo:q, 7uqb:q, 7uqz:q, 7v08:q, 6yly:q
6 3cx5:O 248 72 0.0641 0.0806 0.2778 0.99 3cx5:D, 3cxh:O, 3cxh:D, 8e7s:L, 8e7s:l, 8ec0:L, 8ec0:l, 1ezv:D, 6giq:D, 6giq:O, 6hu9:D, 6hu9:O, 2ibz:D, 1kb9:D, 1kyo:D, 1kyo:O, 1p84:D, 4pd4:D, 6t0b:D, 6t0b:O, 6t15:D, 6t15:O, 6ymx:D, 6ymx:O
7 6afn:A 268 69 0.0673 0.0784 0.3043 3.3 6afp:A, 6afp:B, 5glb:A, 5gld:A
8 7rja:D 244 68 0.0673 0.0861 0.3088 3.7 7rja:N, 7rjb:D, 7rjc:D, 7rjd:D, 7rje:D, 7rje:N
9 7aju:UT 2313 90 0.0705 0.0095 0.2444 5.4 7ajt:UT, 6zqc:UT, 6zqd:UT, 6zqe:UT

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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