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BioLiP
>protein
KPKVSLNPPWNRIFKGENVTLTCNGNNFVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFS
DWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPL
NITVIK

The query sequence (length=166) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1rpq:D 167 167 1.0000 0.9940 0.9940 7.35e-122 1rpq:A, 1rpq:B, 1rpq:C
2 7kcz:F 169 165 0.4217 0.4142 0.4242 1.55e-39
3 8cha:A 168 164 0.3735 0.3690 0.3780 2.02e-35
4 6mss:A 181 84 0.1566 0.1436 0.3095 5.91e-04
5 3mbe:C 192 84 0.1566 0.1354 0.3095 6.13e-04 3mbe:G
6 6iaa:A 815 193 0.2590 0.0528 0.2228 0.002 6iaa:B
7 7ok5:A 582 176 0.2711 0.0773 0.2557 0.002 7ok5:B
8 8edi:A 200 194 0.2349 0.1950 0.2010 0.006 8edi:B
9 2iep:A 187 72 0.1446 0.1283 0.3333 0.015 2iep:B
10 5vkm:A 306 85 0.1446 0.0784 0.2824 0.019
11 1x9q:A 231 34 0.0783 0.0563 0.3824 0.022
12 4fab:H 216 34 0.0843 0.0648 0.4118 0.037 1flr:H
13 4x8x:B 393 59 0.0964 0.0407 0.2712 0.040 4x8x:A, 4x9f:A
14 4x8x:B 393 108 0.1687 0.0712 0.2593 0.32 4x8x:A, 4x9f:A
15 4xb8:A 391 59 0.0964 0.0409 0.2712 0.044 4xb8:B
16 4xb8:A 391 145 0.2169 0.0921 0.2483 0.060 4xb8:B
17 6h4l:A 96 90 0.1506 0.2604 0.2778 0.061
18 1efx:D 197 94 0.1506 0.1269 0.2660 0.075
19 8qpx:A 199 110 0.1687 0.1407 0.2545 0.099
20 8qpx:A 199 36 0.0904 0.0754 0.4167 5.5
21 7v1v:A 447 80 0.1265 0.0470 0.2625 0.11 7v1v:F, 7v1v:B, 7v1v:E, 7v1v:C, 7v1v:D, 7v1w:A, 7v1w:C, 7v1w:B, 7v1w:D, 7v1w:E, 7v1w:F, 7v1x:A, 7v1x:D, 7v1x:B, 7v1x:C, 7v1x:F, 7v1x:E
22 8g8d:B 211 115 0.1807 0.1422 0.2609 0.13 8g8d:L
23 4e41:D 181 85 0.1506 0.1381 0.2941 0.17
24 5k6x:A 374 145 0.2108 0.0936 0.2414 0.18 5k6y:A
25 5men:D 200 85 0.1506 0.1250 0.2941 0.31 4e41:I, 2iam:C, 2ian:D, 2ian:I, 2ian:N, 2ian:S, 4mnq:D, 6r2l:D
26 4p2o:C 200 85 0.1386 0.1150 0.2706 0.41 4p2q:D, 4p2q:I, 4p2q:N, 4p2q:S, 4p2r:D, 4p2r:I, 4p2r:N, 4p2r:S, 3qib:C, 3qiu:C, 3qiw:C
27 6eg1:A 220 43 0.0904 0.0682 0.3488 0.42 6eg1:C
28 2yd8:A 198 73 0.1024 0.0859 0.2329 0.46
29 6lyc:A 110 19 0.0663 0.1000 0.5789 0.59
30 1m7d:B 220 36 0.0843 0.0636 0.3889 0.96 1m7i:B, 1pz5:B
31 6ju0:I 213 34 0.0723 0.0563 0.3529 1.3 6ju0:H, 6ju0:J, 6ju0:K, 6jwc:H, 7lki:AAA
32 2ck0:H 211 49 0.0723 0.0569 0.2449 1.4 3ck0:H
33 8axh:H 227 34 0.0843 0.0617 0.4118 1.7 5a2i:H, 5a2j:H, 5a2k:H, 5a2l:H, 1a6v:L, 1a6v:M, 1a6v:N, 1a6w:L, 2bjm:L, 1dl7:L, 6frj:H, 5fxc:H, 6fzq:H, 6fzr:H, 5n7b:H, 1oar:L, 1oar:M, 1oar:N, 1oar:O, 1oau:M, 1oau:O, 1oau:L, 1oau:N, 1oay:L, 1oay:N, 5owp:H, 1p4b:L, 6tgg:H
34 6s9f:B 300 120 0.1747 0.0967 0.2417 2.0 6s9f:A
35 6s9f:B 300 113 0.1687 0.0933 0.2478 3.5 6s9f:A
36 2yd1:A 196 70 0.1145 0.0969 0.2714 2.5
37 5xnp:A 361 64 0.1084 0.0499 0.2812 3.1 5xnp:B, 5xnq:A
38 6zvf:H 221 72 0.1325 0.0995 0.3056 3.2
39 4xzu:F 195 74 0.1325 0.1128 0.2973 3.3
40 1oga:D 199 30 0.0663 0.0553 0.3667 3.5 5hhm:D, 5hhm:I, 5hho:D, 2vlj:D, 2vlk:D, 2vlr:D, 2vlr:I
41 1e59:A 239 48 0.1024 0.0711 0.3542 4.0
42 4ig6:A 223 51 0.0904 0.0673 0.2941 4.0
43 1ynk:H 219 34 0.0723 0.0548 0.3529 4.4 2cgr:H, 1ynl:H
44 8duz:A 209 35 0.0783 0.0622 0.3714 4.4 8duz:C
45 1ncw:H 222 21 0.0542 0.0405 0.4286 4.5 3g5y:B, 3lex:H, 3lex:A, 3ley:H, 1nd0:B, 1nd0:D, 1nd0:F, 1nd0:H
46 4liq:E 469 62 0.1265 0.0448 0.3387 4.5
47 3v0w:H 214 28 0.0783 0.0607 0.4643 4.7
48 4de8:A 374 65 0.1024 0.0455 0.2615 5.3 3tel:A, 3tep:A, 3tfl:A, 2xxp:A, 2xxq:A
49 8dow:D 217 93 0.1506 0.1152 0.2688 5.4 8dow:H, 8dow:L, 8dp1:M, 8dp1:F, 8dp1:O
50 6mqm:B 217 93 0.1506 0.1152 0.2688 5.6 6mqm:E, 6mqm:H, 6mqm:K
51 6mnq:L 219 93 0.1506 0.1142 0.2688 6.1 6p7h:B
52 6lcs:A 168 28 0.0542 0.0536 0.3214 6.1
53 5viy:H 223 23 0.0602 0.0448 0.4348 6.3 5viy:J
54 1igj:B 217 37 0.0783 0.0599 0.3514 6.3 1igj:D
55 5l6q:A 108 93 0.1325 0.2037 0.2366 6.4 5l6q:B
56 9at8:L 121 25 0.0602 0.0826 0.4000 6.9
57 7lfd:H 224 64 0.1024 0.0759 0.2656 6.9
58 4why:L 218 93 0.1325 0.1009 0.2366 7.4 5aum:L, 5aum:B, 4wht:B, 4wht:D, 4wht:F, 4wht:H, 4wht:J, 4wht:L, 4wht:N, 4wht:R, 4wht:P, 4wht:T, 4wht:V, 4wht:Y, 4why:J, 4why:N, 4why:H
59 4od3:L 213 29 0.0783 0.0610 0.4483 7.5
60 5d9q:D 222 22 0.0602 0.0450 0.4545 7.6 5d9q:I, 5d9q:O, 8san:D, 8san:H, 8san:L, 6vi0:L, 6vi0:D, 6vi0:J
61 5yax:B 230 127 0.1807 0.1304 0.2362 7.7
62 7mfr:B 214 44 0.0723 0.0561 0.2727 8.0 7mfr:Y
63 6pds:L 212 93 0.1506 0.1179 0.2688 8.0 6pds:A
64 5w5x:L 212 93 0.1386 0.1085 0.2473 8.1
65 7tps:B 209 19 0.0482 0.0383 0.4211 8.1 8alx:A, 7bea:A, 7bea:B, 7dy7:B, 7dy7:A, 9eo0:A, 9eo0:B, 9eo0:C, 9eo0:F, 9eo0:D, 9eo0:E, 9ery:A, 9ery:B, 5j89:C, 5j89:D, 5j89:A, 5j89:B, 5j8o:A, 5j8o:B, 8jba:A, 8jba:B, 8k5n:A, 8k5n:B, 5n2d:A, 5n2d:B, 5n2d:C, 5n2d:D, 5n2f:A, 5n2f:B, 5niu:A, 5niu:B, 5niu:C, 5niu:D, 7nld:A, 7nld:B, 7nld:C, 7nld:D, 7nld:E, 6nm7:A, 6nm7:B, 6nm8:A, 6nm8:B, 6nnv:B, 6nnv:C, 6nnv:A, 6nnv:D, 6noj:A, 6noj:B, 6nos:A, 6nos:B, 5o45:A, 5o4y:E, 5o4y:B, 5o4y:C, 8or1:A, 8or1:B, 7oun:A, 8p1o:A, 8p1o:B, 8p64:A, 8p64:B, 6pv9:A, 6r3k:A, 6r3k:B, 6r3k:C, 6r3k:D, 8r6q:A, 8r6q:B, 6rpg:A, 6rpg:B, 7ux5:A, 7ux5:C, 7ux5:E, 7ux5:I, 7ux5:G, 7ux5:K, 7uxo:A, 7uxp:A, 7uxp:B, 7uxq:A, 7uxq:B, 6vqn:A, 6vqn:B, 6vqn:C, 7vun:C, 7vun:E, 7vun:D, 7vun:G, 7vun:F, 7vun:B, 7vun:H, 7xyq:A, 6ycr:A
66 6h3t:I 118 38 0.0723 0.1017 0.3158 8.3
67 6ldw:H 198 22 0.0542 0.0455 0.4091 8.4 6ldw:B
68 7mxd:D 204 24 0.0542 0.0441 0.3750 9.2 8gje:L, 8gje:J, 8gje:K, 7ly9:C, 7ly9:I, 7mxd:U, 7n28:D, 7n28:K, 7n28:U, 7pc2:L, 7pc2:J, 5v8l:L, 5v8l:K, 5v8m:L, 5v8m:T, 5v8m:U

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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