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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KPKKIRVCVGTWNVNGKNQTLTDWLLDAPKLAGIQEFQDKRSKPTDIFAIGFEEMVELNAGNIVSASTTNQKLWAVELQK
TISRDNKYVLLASEQLVGVCLFVFIRPQHAPFIRDVAVDTVKTGNKGAVAIRMLFHTTSLCFVCSHFAAGQSQVKERNED
FIEIARKLSFPMGRMLFSHDYVFWCGDFNYRIDLPNEEVKELIRQQNWDSLIAGDQLINQKNAGQVFRGFLEGKVTFAPT
YKYDLFSDDYDTSEKCRTPAWTDRVLWRRRKWPFDRSAEDLDLLYTWTPGTLLHYGRAELKTSDHRPVVALIDIDIFEV

The query sequence (length=319) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7a17:A 336 335 1.0000 0.9494 0.9522 0.0 7a0v:A, 7a0v:E, 7a17:C
2 5a7i:A 313 331 0.3824 0.3898 0.3686 1.12e-63 5a7j:A, 5a7j:B, 4cml:A, 3mtc:A, 3n9v:A, 3n9v:B
3 1i9z:A 336 325 0.3887 0.3690 0.3815 4.96e-62
4 4cmn:A 339 323 0.3605 0.3392 0.3560 5.06e-62
5 8pdg:AAA 462 344 0.3197 0.2208 0.2965 2.82e-37 8pdh:AAA, 8pdi:A, 8pdj:AAA, 5rw2:A, 5rw4:A, 5rw5:A, 5rw6:A, 5rw7:A, 5rw8:A, 5rw9:A, 5rwa:A, 5rwb:A, 5rwc:A, 5rwd:A, 5rwe:A, 5rwf:A, 5rwg:A, 5rwh:A, 5rwj:A, 5rwk:A, 5rwl:A, 5rwn:A, 5rwp:A, 5rwq:A, 5rwr:A, 5rws:A, 5rwt:A, 5rwu:A, 5rwv:A, 5rww:A, 5rwx:A, 5rwy:A, 5rwz:A, 5rx0:A, 5rx1:A, 5rx2:A, 5rx3:A, 5rx4:A, 5rx5:A, 5rx6:A, 5rx7:A, 5rx8:A, 5rx9:A, 5rxa:A, 5rxb:A, 5rxc:A, 5rxd:A, 5rxe:A, 5rxf:A, 5rxg:A, 5rxh:A, 5rxi:A, 5rxj:A, 5rxk:A, 5rxl:A, 5rxo:A, 5rxp:A, 5rxq:A, 5rxr:A, 5rxs:A, 5rxt:A, 5rxu:A, 5rxv:A, 5rxw:A, 5rxy:A, 5rxz:A, 5ry0:A, 5ry1:A, 5ry2:A, 5ry3:A, 5ry4:A, 5ry5:A, 5ry6:A, 5ry7:A, 5ry8:A, 5ry9:A, 5rya:A, 5ryb:A, 5ryc:A, 5ryd:A, 5rye:A, 5ryg:A, 5ryh:A, 5ryi:A, 5ryj:A, 5ryk:A, 5ryl:A, 6xy7:AAA
6 5okn:G 402 329 0.2853 0.2264 0.2766 3.32e-33 6squ:A
7 5okn:D 433 333 0.2884 0.2125 0.2763 9.62e-32 4a9c:B, 5okn:C, 5okn:E, 5okn:F, 5okn:H, 6squ:B
8 2imq:X 280 131 0.1505 0.1714 0.3664 9.48e-17 4l1y:A, 4l1z:A, 4l20:A, 4l21:A, 1ntf:A, 1si6:X, 1y21:A, 1yjh:A
9 7b9v:D 194 126 0.1066 0.1753 0.2698 0.97 5gmk:F, 5lj3:D, 5lj5:D
10 4dmg:A 385 92 0.0752 0.0623 0.2609 1.4 4dmg:B
11 6bpn:A 656 122 0.1066 0.0518 0.2787 2.4
12 5xx1:G 735 78 0.0690 0.0299 0.2821 2.9 5xx1:B, 5xx1:C, 5xx1:D, 5xx1:E, 5xx1:F, 5xx1:H, 5xx1:I
13 2vyc:A 755 78 0.0690 0.0291 0.2821 7.6 2vyc:B, 2vyc:C, 2vyc:D, 2vyc:E, 2vyc:F, 2vyc:G, 2vyc:H, 2vyc:I, 2vyc:J

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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