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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KPKFFYIKSELNGKVLDIEGQNPAPGSKIITWDQKKGPTAVNQLWYTDQQGVIRSKLNDFAIDASHEQIETQPFDPNNPK
RAWIVSGNTIAQLSDRDIVLDIIKSDKEAGAHICAWKQHGGPNQKFIIESE

The query sequence (length=131) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2zqn:A 131 131 1.0000 1.0000 1.0000 4.83e-95 2drz:A, 2drz:B, 2ds0:A, 2ds0:B, 2zqn:B, 2zqo:A, 2zqo:B
2 3ah1:B 288 39 0.1069 0.0486 0.3590 0.14 3ah1:A, 3ah4:B
3 6ifb:B 135 33 0.0992 0.0963 0.3939 0.38 6ifb:A
4 4ouj:A 281 58 0.1374 0.0641 0.3103 0.54 4ouj:B
5 4owl:D 137 46 0.1069 0.1022 0.3043 0.55 4owj:A, 4owj:B, 4owj:C, 4owj:D, 4owj:E, 4owj:F, 4owj:G, 4owk:A, 4owk:B, 4owk:C, 4owk:D, 4owk:E, 4owk:F, 4owk:G, 4owl:B, 4owl:C, 4owl:E, 4owl:F, 4owl:A, 4owl:G
6 5bp5:A 286 63 0.1374 0.0629 0.2857 2.2 5bp5:B, 5bqu:B, 5bqu:A, 4lo1:A, 4lo1:B, 4lo2:A, 4lo2:B, 4lo3:A, 4lo3:B
7 3mwf:A 292 25 0.1145 0.0514 0.6000 3.7
8 1onk:B 263 70 0.1450 0.0722 0.2714 3.9 3d7w:B, 1oql:B, 1pum:B, 1puu:B, 2r9k:B, 2rg9:B, 1sz6:B, 1tfm:B, 1yf8:B
9 1knm:A 129 59 0.1298 0.1318 0.2881 4.8 1mc9:A
10 2ebs:B 771 37 0.1069 0.0182 0.3784 8.6 2ebs:A
11 4ruw:A 386 60 0.1374 0.0466 0.3000 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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