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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKLNKKVTQQDVKKENPLQFKFRA
KFFPEDVSEELIQEITQRLFFLQVKEAILNDEIYCPPETAVLLASYAVQAKYGDYNKEIHKPGYLANDRLLPQRVLEQHK
LTKEQWEERIQNWHEEHRGMLREDSMMEYLKIAQDLEMYGVNYFEIKNKKGTELWLGVDALGLNIYEHDDKLTPKIGFPW
SEIRNISFNDKKFVIKPIDKKAPDFVFYAPRLRINKRILALCMGNHELYMRRRKP

The query sequence (length=295) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2ems:A 316 295 1.0000 0.9335 1.0000 0.0 2d10:A, 2d10:B, 2d10:C, 2d10:D, 2d11:A, 2d11:B, 2d11:C, 2d11:D, 2emt:A, 2emt:B, 1gc6:A, 1j19:A, 3x23:A, 2yvc:A, 2yvc:B, 2yvc:C, 2zpy:A
2 8cir:B 345 295 0.8949 0.7652 0.8949 0.0 8cir:A, 8cis:A, 6txs:AAA
3 6cds:A 325 294 0.6271 0.5692 0.6293 3.01e-137 6cds:B, 7lwh:A, 4p7i:A, 4p7i:B, 3wa0:A, 3wa0:B, 3wa0:C, 3wa0:E, 3wa0:F, 4zri:A, 4zri:B, 4zrk:A, 4zrk:C, 4zrk:B, 4zrk:D
4 5rym:A 284 294 0.3051 0.3169 0.3061 3.25e-37 3bin:A, 5ryn:A, 5ryo:A, 5ryp:A, 5ryq:A, 5ryr:A, 5rys:A, 5ryt:A, 5ryu:A, 5ryv:A, 5ryw:A, 5ryx:A, 5ryy:A, 5ryz:A, 5rz0:A, 5rz1:A, 5rz2:A, 5rz3:A, 5rz4:A, 5rz5:A, 5rz6:A, 5rz7:A, 5rz8:A, 5rz9:A, 5rza:A, 5rzb:A, 5rzc:A, 5rzd:A, 5rze:A, 5rzf:A, 5rzg:A, 5rzh:A, 5rzi:A, 5rzj:A, 5rzk:A, 5rzl:A, 5rzm:A, 5rzn:A, 5rzo:A, 5rzp:A, 5rzq:A, 5rzr:A, 5rzs:A, 5rzt:A, 5rzu:A, 5rzv:A, 5rzw:A, 5rzx:A, 5rzy:A, 5rzz:A, 5s00:A
5 6mfs:A 370 154 0.1390 0.1108 0.2662 4.07e-11 2g35:A, 2k00:A, 1mk7:B, 1mk7:D, 1mk9:B, 1mk9:D, 1mk9:F, 1mk9:H, 2mwn:B, 1y19:B, 1y19:D, 1y19:F, 1y19:H, 1y19:J, 1y19:L
6 4hdq:A 311 189 0.1390 0.1318 0.2169 1.23e-05 6oq3:A, 6oq4:A, 8su8:A, 8t09:A, 8t7v:A, 3u7d:A, 3u7d:C, 6uzk:A
7 1itw:A 740 70 0.0780 0.0311 0.3286 4.5 1itw:B, 1itw:C, 1itw:D, 1j1w:A, 1j1w:B, 1j1w:C, 1j1w:D
8 2wlt:A 326 37 0.0542 0.0491 0.4324 4.6 2wt4:A
9 7xwo:B 272 44 0.0475 0.0515 0.3182 5.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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