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BioLiP
>protein
KPIFSRDLNEAKRRVRELYRAWYREVPNTVHLMQLDITVKQGRDKVREMFMKNAHVTDPRVVDLLVIKGKMELQETIKVW
KQRTHVMRFFHETETPRPKDFLSKFYMGH

The query sequence (length=109) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8q0f:W 116 109 0.9266 0.8707 0.9266 4.61e-74 7ak5:W, 7ak6:W, 7b93:W, 8c2s:W, 8ca3:W, 8ca5:W, 6g2j:W, 6g72:W, 5gup:Q, 8iao:W, 8iap:W, 8ib4:W, 8ib5:W, 8ib9:W, 8iba:W, 8ibd:W, 8ibe:W, 8ic2:W, 8ic3:W, 5lnk:g, 8olt:W, 8om1:W, 7psa:W, 8pw5:W1, 8pw6:W1, 8pw7:W1, 8q0a:W, 8q0j:W, 8q0m:W, 8q0o:W, 8q0q:W, 8q1p:W, 8q1u:W, 8q1y:W, 8q25:W, 8q45:W, 8q46:W, 8q47:W, 8q48:W, 8q49:W, 8q4a:W, 6q9d:A6, 6qa9:A6, 6qbx:A6, 6qc2:A6, 6qc3:A6, 6qc4:A6, 6qc5:A6, 6qc6:A6, 6qc7:A6, 6qc8:A6, 6qc9:A6, 6qca:A6, 6qcf:A6, 7qsd:W, 7qsk:W, 7qsl:W, 7qsm:W, 7qsn:W, 7qso:W, 7r41:W, 7r42:W, 7r43:W, 7r44:W, 7r45:W, 7r46:W, 7r47:W, 7r48:W, 7r4c:W, 7r4d:W, 7r4f:W, 7r4g:W, 8rgp:W, 8rgq:W, 8rgr:W, 8rgt:W, 8ud1:1W, 8ueo:1W, 8uep:1W, 8ueq:1W, 8uer:1W, 8ues:1W, 8uet:1W, 8ueu:1W, 8uev:1W, 8uew:1W, 8uex:1W, 8uey:1W, 8uez:1W, 8ugh:1W, 8ugi:1W, 8ugj:1W, 8ugn:1W, 8ugn:5W, 8ugr:1W, 8ugr:5W, 7v2c:E, 7v2d:E, 7v2e:E, 7v2f:E, 7v2h:E, 7v2k:E, 7v2r:E, 7v30:E, 7v31:E, 7v32:E, 7v33:E, 7v3m:E, 7vb7:E, 7vbn:E, 7vbz:E, 7vwj:E, 7vxp:E, 7vxu:E, 7vy8:E, 7vya:E, 7vyf:E, 7vyh:E, 7vyn:E, 7vz1:E, 7vzv:E, 7vzw:E, 7w00:E, 7w0h:E, 7w0r:E, 7w0y:E, 7w1o:E, 7w1p:E, 7w1t:E, 7w1u:E, 7w1v:E, 7w1z:E, 7w20:E, 7w2k:E, 7w2l:E, 7w2r:E, 7w2u:E, 7w2y:E, 7w31:E, 7w32:E, 7w35:E, 7w4c:E, 7w4d:E, 7w4e:E, 7w4f:E, 7w4g:E, 7w4j:E, 7w4k:E, 7w4l:E, 7w4m:E, 7w4n:E, 7w4q:E, 5xtb:E, 5xtd:E, 5xth:E, 5xti:E, 5xti:BE, 7zd6:g, 7zdh:g, 7zdj:g, 7zdm:g, 7zdp:g, 7zeb:g, 6zk9:g, 6zkc:g, 6zkd:g, 6zke:g, 6zkf:g, 6zkg:g, 6zkh:g, 6zki:g, 6zkj:g, 6zkk:g, 6zkl:g, 6zkm:g, 6zkn:g, 6zko:g, 6zkp:g, 6zkq:g, 6zkr:g, 6zks:g, 6zkt:g, 6zku:g, 6zkv:g, 6zr2:W, 6ztq:W
2 8esz:A6 115 108 0.5138 0.4870 0.5185 1.80e-39 8b9z:W, 8ba0:W, 8esw:A6
3 7zm7:P 122 108 0.3394 0.3033 0.3426 2.73e-17 7zmb:P, 7zmg:P
4 7aqr:W 112 110 0.3578 0.3482 0.3545 2.24e-16 7ar7:W, 7ar8:W, 7arb:W, 8bee:W, 8bpx:W, 8bq5:W, 8bq6:W
5 7b0n:W 123 106 0.3028 0.2683 0.3113 6.93e-14 6gcs:P, 7o6y:P, 7o71:P, 6rfq:P, 6rfr:P, 6rfs:P, 6y79:P, 6yj4:W
6 8e73:A6 99 92 0.2752 0.3030 0.3261 8.99e-11
7 7arc:W 127 77 0.2385 0.2047 0.3377 3.85e-08 7ard:W
8 8b6f:AS 172 110 0.2294 0.1453 0.2273 0.18 8bqs:AS, 8gym:a6, 8gym:A6, 7tgh:A6
9 8hey:D 1270 36 0.1376 0.0118 0.4167 0.54
10 8e73:B9 111 66 0.1835 0.1802 0.3030 0.55
11 8u4o:R 295 39 0.1101 0.0407 0.3077 0.87 8u4n:R, 8u4p:R, 8u4q:R, 8u4r:R, 8u4s:R, 8u4s:G, 8u4s:C, 8u4t:R, 8u4t:I, 8u4t:Q, 8u4t:AA
12 8gsm:G 439 48 0.1376 0.0342 0.3125 2.1 8gsm:I
13 7zm7:R 98 36 0.1193 0.1327 0.3611 2.7 7zm8:R, 7zmb:R, 7zme:R, 7zmg:R, 7zmh:R
14 8hkx:AS5P 204 45 0.1193 0.0637 0.2889 2.8 8hky:AS5P, 8hkz:AS5P, 8hl1:AS5P, 8hl2:AS5P, 8hl3:AS5P, 8hl4:AS5P, 8hl5:AS5P, 8wkp:AS5P, 8wq2:AS5P, 8wq4:AS5P
15 7eto:a 1297 29 0.1284 0.0108 0.4828 3.1 7et3:a, 7etj:a
16 7ykk:E 735 34 0.0826 0.0122 0.2647 4.7 7nku:A, 7nku:F, 7nku:B, 7nku:C, 7nku:D, 7nku:E, 7wbb:A, 7wbb:B, 7wbb:D, 7wbb:E, 7wbb:C, 7wd3:A, 7wd3:B, 7wd3:C, 7wd3:D, 7wd3:E, 7wd3:F, 7ykk:D, 7ykk:F, 7ykk:A, 7ykk:B, 7ykk:C, 7ykl:F, 7ykl:A, 7ykl:B, 7ykl:C, 7ykl:D, 7ykl:E, 7ykt:F, 7ykt:A, 7ykt:B, 7ykt:C, 7ykt:D, 7ykt:E, 7ykz:D, 7ykz:C, 7ykz:F, 7ykz:B, 7ykz:E, 7ykz:A, 7z11:A, 7z11:B, 7z11:C, 7z11:D, 7z11:F, 7z11:E, 7z34:w, 7z34:m, 7z34:n, 7z34:t, 7z34:Aa, 7z34:x
17 6bum:B 363 33 0.1193 0.0358 0.3939 7.6 6bum:A, 6bum:C, 6bum:D, 6bun:A, 6bun:B, 6bun:C, 6bun:D, 6buo:A, 6buo:D, 6buo:B, 6buo:C, 6bup:A, 6bup:B, 6bup:C, 6bup:D, 6buq:A, 6buq:D, 6buq:B, 6buq:C, 6bur:A, 6bur:B, 6bur:C, 6bur:D, 6cwj:A, 6cwj:B, 6cwj:C, 6cwj:D
18 4fe2:B 235 51 0.1284 0.0596 0.2745 7.6 4fe2:A, 4fgr:A, 4fgr:B, 4nye:A, 4nye:B
19 5ubv:A 244 33 0.1009 0.0451 0.3333 8.4 5ubv:B
20 8iuf:A6 423 64 0.1284 0.0331 0.2188 9.0 8j9h:A6, 8j9i:A6, 8j9j:A6
21 1zpu:A 529 55 0.1009 0.0208 0.2000 9.7 1zpu:B, 1zpu:C, 1zpu:D, 1zpu:E, 1zpu:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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