Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KPGSLTIAGSGIASIGHITLETLALIKEADKIFYAVTDPATECYIQENSRGDHFDLTTFYDTNKKRYESYVQMSEVMLRD
VRAGRNVLGIFYGHPGVFVAPSHRAIAIAREEGFQAKMLPGISAEDYMFADLGFDPSTYGCMTQEATELLVRNKKLDPSI
HNIIWQVGSVGVDTMVFDNGKFHLLVERLEKDFGLDHKIQHYIGAILPQSVTVKDTFAIRDLRKEEVLKQFTTTSTFYVP
PRTPAPIDPKAVQALGLPATVTKGAQDWTGFQSVSPAYGPDEMRAVAALDSFVPSQEKAVVHASRAMQSLMVDLALRPAL
LEQYKADPVAFANTRNGLTAQEKFALGLKKPGPIFVVMRQLPSAIASGQEPSQEEIARADLALVVVIV

The query sequence (length=388) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7twk:B 392 388 0.9845 0.9745 0.9845 0.0 7twk:A, 7twk:C, 7twk:D, 7twl:A, 7twl:B, 7twl:C, 7twl:D, 7twm:A, 7twm:B, 7twm:C, 7twm:D
2 6mjg:A 386 374 0.4278 0.4301 0.4439 6.70e-107 6mjf:A, 6mjf:B, 6mjf:C, 6mjf:D, 6mjf:F
3 5n0s:B 404 391 0.4330 0.4158 0.4297 2.56e-101 6gew:A, 5n0n:A, 5n0o:A, 5n0o:B, 5n0p:A, 5n0p:B, 5n0q:A, 5n0q:B, 5n0r:A, 5n0s:A, 5n0t:A, 5n0t:B, 5n0u:A, 5n0v:A, 5n0v:B, 5n0w:A, 5n0w:B, 5n0x:A, 5n0x:B, 5n4i:A, 5ouf:A, 6qzy:A, 6qzz:A, 6qzz:B, 6r00:A, 6tsc:A
4 7lte:A 262 245 0.2139 0.3168 0.3388 7.68e-40 7lte:C, 7ltr:A, 7ltr:H, 7lts:A, 7lts:C, 8t1s:A, 8t1s:C, 8t1t:A, 8t1t:C
5 2e0n:B 238 128 0.1005 0.1639 0.3047 0.011 2e0n:A
6 1cbf:A 239 120 0.0773 0.1255 0.2500 0.061 2cbf:A
7 2ybo:A 248 191 0.1186 0.1855 0.2408 0.25 2ybq:A
8 4nas:B 399 69 0.0593 0.0576 0.3333 1.1 4nas:A, 4nas:C, 4nas:D
9 1pjq:B 455 124 0.0670 0.0571 0.2097 1.2 6p5x:A, 6p5x:B, 6p5z:A, 6p5z:B, 6p7c:A, 6p7c:B, 6p7d:A, 6p7d:B, 1pjs:A, 1pjs:B, 1pjt:A, 1pjt:B, 6pqz:A, 6pqz:B, 6pr0:A, 6pr0:B, 6pr1:A, 6pr1:B, 6pr2:A, 6pr2:B, 6pr3:A, 6pr3:B, 6pr4:A, 6pr4:B, 6ulu:A, 6ulu:B, 6veb:A, 6veb:B
10 2ebf:X 711 106 0.0696 0.0380 0.2547 2.4 2ebh:X
11 6ynx:g 256 105 0.0619 0.0938 0.2286 5.2 6ynx:G, 6yny:g, 6yny:G, 6ynz:g, 6ynz:G, 6ynz:g3, 6ynz:G3
12 3opy:B 884 52 0.0438 0.0192 0.3269 5.5 3opy:D, 3opy:F, 3opy:H
13 1s4d:E 265 125 0.0773 0.1132 0.2400 6.2 1s4d:A, 1s4d:B, 1s4d:D, 1s4d:F, 1s4d:G, 1s4d:H, 1s4d:I, 1s4d:J, 1s4d:K, 1s4d:L, 1s4d:M
14 5a22:A 2002 76 0.0567 0.0110 0.2895 6.3
15 6u1x:A 2059 76 0.0567 0.0107 0.2895 6.6
16 5vkw:B 469 57 0.0438 0.0362 0.2982 7.2
17 6fw8:B 417 116 0.0773 0.0719 0.2586 9.1 6esd:B, 6esd:A, 6fw7:B, 6fw7:A, 6fw8:A, 6fw9:B, 6fw9:A, 6fwa:B, 6fwa:A, 6g2p:B, 6g2p:A, 5g3s:A, 5g3s:B, 5g3t:A, 5g3t:B, 5g3t:C, 5g3t:D, 5g3u:A, 5g3u:B, 5zbc:A, 5zbc:B, 5zbd:A, 5zbd:B
18 4hz7:A 441 65 0.0567 0.0499 0.3385 9.3 4hz8:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218