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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KPDETPMFDPSLLKEVDWSQNTATFSPAISPTHPGEGLVLRPLCTADLNRGFFKVLGQLTETGVVSPEQFMKSFEHMKKS
GDYYVTVVEDVTLGQIVATATLIIEHKFIHSCAKRGRVEDVVVSDECRGKQLGKLLLSTLTLLSKKLNCYKITLECLPQN
VGFYKKFGYTVSEENYMCRRFL

The query sequence (length=182) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3cxq:A 182 182 1.0000 1.0000 1.0000 2.02e-136 2o28:A, 2o28:B
2 4ag7:A 165 162 0.3736 0.4121 0.4198 9.44e-41 4ag7:B, 4ag9:A, 4ag9:B
3 6tdf:A 165 168 0.3407 0.3758 0.3690 6.13e-32 6tdg:A, 6tdh:A, 2vez:A, 2vxk:A
4 1i1d:D 161 146 0.2637 0.2981 0.3288 1.07e-18 1i12:A, 1i12:B, 1i12:C, 1i12:D, 1i1d:A, 1i1d:B, 1i1d:C
5 7zkt:B 202 65 0.1209 0.1089 0.3385 0.005 7zhc:A, 7zhc:B, 7zkt:A, 7zkt:C, 7zkt:D, 7zkt:E, 7zkt:F, 7zkt:G, 7zkt:H
6 6nbe:N 186 56 0.1044 0.1022 0.3393 0.033 6nas:N, 6nbw:N
7 7daj:B 150 89 0.1484 0.1800 0.3034 0.051 7daj:A, 7dak:A, 7dak:B, 7dal:A, 7dal:B
8 6yug:A 143 95 0.1648 0.2098 0.3158 0.068 6yug:B
9 4jxr:B 185 139 0.2033 0.2000 0.2662 0.30
10 5jph:B 144 55 0.0714 0.0903 0.2364 0.41 5jph:A, 5jph:C
11 7k0a:A 196 54 0.0769 0.0714 0.2593 0.67 7k09:A, 7k09:B, 7k09:C, 7k09:D, 7k09:E, 7k09:F, 7k0a:B
12 3fys:A 282 69 0.1099 0.0709 0.2899 0.75
13 4ua3:B 193 67 0.0879 0.0829 0.2388 0.90 4ua3:A
14 3am8:A 276 104 0.1484 0.0978 0.2596 1.3 3am8:B, 7bh8:A, 7bh8:C, 3bze:A, 3bze:C, 3bze:G, 3bze:E, 3bzf:A, 3bzf:C, 3cdg:A, 3cdg:C, 3cii:A, 3cii:D, 2esv:A, 6ggm:A, 6ggm:C, 6gh1:A, 6gh1:C, 6gh1:E, 6gh1:G, 6gh4:A, 6gh4:C, 6gh4:E, 6gh4:G, 6ghn:A, 6ghn:C, 6gl1:A, 6gl1:E, 6gl1:G, 6gl1:C, 1kpr:A, 1kpr:C, 1ktl:A, 1ktl:C, 1mhe:A, 1mhe:C, 7ndq:AAA, 7ndt:AAA, 7ndt:FFF, 7ndu:AAA, 7p49:A, 7p49:C, 7p49:E, 7p49:G, 7p4b:A, 7p4b:E, 7p4b:C, 7p4b:G, 8qfy:AAA, 8qfy:FFF, 5w1v:A, 5w1v:F, 5w1v:K, 5w1v:P, 5w1w:A, 5w1w:F, 5w1w:K, 5w1w:P, 6zkw:A, 6zkx:A, 6zky:A, 6zkz:A
15 3mgd:B 154 67 0.0824 0.0974 0.2239 1.3 3mgd:A
16 7kd7:A 204 48 0.0824 0.0735 0.3125 1.6 7kd7:D, 7kpu:D, 7kpu:A, 4u9v:B, 4u9w:B, 4u9w:A, 4u9w:C, 4u9w:D
17 3pp9:A 176 68 0.1044 0.1080 0.2794 1.8 3pp9:B, 3pp9:C
18 5wje:A 159 62 0.1209 0.1384 0.3548 1.9 5wjd:A
19 1fsu:A 475 99 0.1538 0.0589 0.2828 2.1
20 4tsh:A 121 94 0.1209 0.1818 0.2340 2.5
21 8a9n:A 150 50 0.0824 0.1000 0.3000 2.5 8a9n:B, 8a9o:A, 8a9o:B
22 6z00:A 156 54 0.0989 0.1154 0.3333 2.9 6yzz:A, 6z00:B
23 5ijc:B 593 25 0.0549 0.0169 0.4000 3.7 5ijc:A
24 3vq1:A 596 25 0.0549 0.0168 0.4000 3.8 7mlm:A, 3vq2:B, 3vq2:A
25 6sc2:B 3930 39 0.0879 0.0041 0.4103 6.8 6rla:A, 6rla:B, 6sc2:A
26 3f8k:A 131 96 0.1429 0.1985 0.2708 7.5
27 5mmi:K 203 64 0.0824 0.0739 0.2344 7.7 6eri:AJ, 5h1s:L, 5mlc:L, 5mmm:K, 4v61:BL, 5x8p:K, 5x8t:K
28 2w3z:A 238 21 0.0604 0.0462 0.5238 9.4
29 5g5s:A 692 26 0.0604 0.0159 0.4231 9.4 5g5t:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218