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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KPASMYRDIDKPAYTRREYITGIPGSKIAQHKMGRKQKDADDYPVQISLIVEETVQLRHGSLEASRLSANRHLIKELGEE
GDYKMTLRKFPHQVLRENKDGMRAAFGKIVGTAARVQAGEQLFTAYCNVEDAEHVKEAFRRAYNKITPSCRIKVERGEEL

The query sequence (length=160) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4v9f:H 165 161 1.0000 0.9697 0.9938 2.90e-117 3cc2:H, 3cc4:H, 3cc7:H, 3cce:H, 3ccj:H, 3ccl:H, 3ccm:H, 3ccq:H, 3ccr:H, 3ccs:H, 3ccu:H, 3ccv:H, 3cd6:H, 3cma:H, 3cme:H, 3cpw:H, 3g4s:H, 3g6e:H, 3g71:H, 3i55:H, 3i56:H, 2otj:H, 2otl:H, 2qa4:H, 2qex:H, 1s72:H, 1vq4:H, 1vq5:H, 1vq6:H, 1vq7:H, 1vq8:H, 1vq9:H, 1vqk:H, 1vql:H, 1vqm:H, 1vqn:H, 1vqo:H, 1vqp:H, 1yhq:H, 1yi2:H, 1yij:H, 1yit:H, 1yj9:H, 1yjn:H, 1yjw:H
2 3cxc:H 156 152 0.5125 0.5256 0.5395 1.75e-54 1jj2:H, 1k73:J, 1k8a:J, 1k9m:J, 1kc8:J, 1kd1:J, 1kqs:H, 1m1k:J, 1m90:J, 1n8r:J, 1nji:J, 3ow2:H, 1q7y:J, 1q81:J, 1q82:J, 1q86:J, 1qvf:H, 1qvg:H, 1w2b:H
3 1ffk:F 157 153 0.4813 0.4904 0.5033 5.76e-46 4v4p:AP, 4v4r:BQ, 4v4s:BQ, 4v4t:BQ
4 8hku:L10E 164 166 0.4125 0.4024 0.3976 5.31e-33 8hkv:L10E, 8hky:L10E, 8hkz:L10E, 8hl1:L10E, 8hl2:L10E, 8hl3:L10E, 8hl4:L10E, 8hl5:L10E
5 6skg:BJ 171 158 0.3937 0.3684 0.3987 1.62e-32 6skf:BJ, 6th6:BJ
6 4v4n:AN 168 165 0.4000 0.3810 0.3879 4.72e-31 4v6u:BN
7 8ip8:HB 205 143 0.3375 0.2634 0.3776 2.33e-28 8ipa:HB, 8ipb:HB, 8jiv:CI
8 8azw:g 209 158 0.3500 0.2679 0.3544 7.19e-27 8b2l:g3, 7qiw:L, 7qiz:L
9 4v3p:LI 184 153 0.3375 0.2935 0.3529 8.73e-27 4v7e:CI
10 8btk:BI 213 167 0.3438 0.2582 0.3293 5.18e-26 7a01:L2, 7a01:X2, 8a3d:p, 5aj0:AI, 8b5l:I, 8b6c:I, 9bdl:AL10, 9bdn:AL10, 9bdp:AL10, 7bhp:LI, 8bhf:r3, 8bpo:I2, 7cpu:LI, 7cpv:LI, 4d5y:I, 4d67:I, 6d90:I, 6d9j:I, 9f1b:BI, 9f1c:BI, 9f1d:BI, 7f5s:LI, 6frk:I, 6ftg:I, 6fti:I, 6ftj:I, 8g5y:LI, 8g5z:LI, 8g60:LI, 8g61:LI, 8g6j:LI, 8glp:LI, 6gz3:AI, 6gz4:AI, 6gz5:AI, 6hcf:I3, 6hcj:I3, 6hcm:I3, 6hcq:I3, 8ifd:2D, 8ife:2D, 6ip5:2D, 6ip6:2D, 6ip8:2D, 3j7o:I, 3j7p:I, 3j7q:I, 3j7r:I, 3j92:I, 3jag:I, 3jah:I, 3jai:I, 3jaj:I, 3jan:I, 8jdj:O, 8jdk:O, 8jdl:O, 8jdm:O, 8k2c:LI, 5lks:LI, 7ls1:D1, 7ls2:D1, 5lzs:I, 5lzt:I, 5lzu:I, 5lzv:I, 5lzw:I, 5lzx:I, 5lzy:I, 5lzz:I, 7mdz:I, 6mtb:I, 6mtc:I, 6mtd:I, 6mte:I, 7nfx:I, 7nwg:I3, 7nwh:I, 7nwi:I, 7o7y:BI, 7o7z:BI, 7o80:BI, 7o81:BI, 7obr:I, 8ohd:LI, 8oj0:LI, 8oj5:LI, 8oj8:LI, 6ole:K, 6olf:K, 6olg:AI, 6oli:K, 6olz:AI, 6om0:K, 6om7:K, 7oya:I1, 7oyb:I1, 7oyc:I1, 7oyd:I, 8p2k:BI, 6p5i:AI, 6p5j:AI, 6p5k:AI, 6p5n:AI, 8q7z:BI, 8q87:BI, 8qfd:I, 7qgg:K, 8qoi:LI, 7qvp:LI, 7qvp:MI, 7qwq:I, 7qwr:I, 7qws:I, 6qzp:LI, 6r5q:I, 6r6g:I, 6r6p:I, 6r7q:I, 8rjb:I, 8rjc:I, 8rjd:I, 8scb:I, 6sgc:I2, 6swa:I, 5t2c:p, 6t59:I3, 7tm3:I, 7toq:AL10, 7tor:AL10, 7tut:I, 7ucj:I, 7uck:I, 4ug0:LI, 4ujc:BI, 4ujd:AI, 4uje:CI, 4v5z:Bh, 4v6x:CI, 6xa1:LI, 7xnx:LI, 7xny:LI, 8xsx:LI, 8xsy:LI, 8xsz:LI, 6y0g:LI, 8y0w:LI, 8y0x:LI, 6y2l:LI, 6y57:LI, 6y6x:LI, 8yoo:LI, 8yop:LI, 6z6l:LI, 6z6m:LI, 6z6n:LI, 7zjw:LL, 7zjx:LL, 6zm7:LI, 6zme:LI, 6zmi:LI, 6zmo:LI, 6zvk:L2, 6zvk:X2
11 9bh5:CI 213 153 0.3250 0.2441 0.3399 1.83e-24 9cai:CI
12 7olc:LI 217 157 0.3438 0.2535 0.3503 3.48e-24 7old:LI, 8oo0:LI, 7z3n:LI, 7z3o:LI
13 4v8p:BH 201 146 0.3125 0.2488 0.3425 7.43e-24 4v8p:CH, 4v8p:EH, 4v8p:GH
14 5xxb:I 193 147 0.3250 0.2694 0.3537 1.26e-23
15 5an9:F 217 167 0.3563 0.2627 0.3413 1.32e-23 5anb:F, 5anc:F, 6qkl:F
16 6zu5:LI0 209 157 0.3375 0.2584 0.3439 1.72e-23
17 7r81:L1 217 157 0.3312 0.2442 0.3376 4.29e-23
18 7qep:M0 211 159 0.3250 0.2464 0.3270 5.42e-23
19 6zj3:Lc 203 148 0.3438 0.2709 0.3716 6.99e-23
20 8c3a:r 208 143 0.3250 0.2500 0.3636 1.07e-22 8c3a:BE, 8cq7:r, 8cq7:BE, 8cqw:r, 8cqw:BE, 8cre:r, 8cre:BE, 8oeq:r, 8oeq:BE, 7pzy:r, 7q08:r, 7q0f:r, 7q0p:r, 7q0r:r, 8q5i:r
21 4v6w:CI 217 153 0.3187 0.2350 0.3333 1.92e-22 6xu6:CI, 6xu7:CI, 6xu8:CI
22 5xy3:I 195 159 0.3312 0.2718 0.3333 2.50e-22
23 8btd:LK 206 157 0.3125 0.2427 0.3185 2.51e-22 8bsi:LK, 8bsj:LK, 8btr:LK, 8fru:I, 7pwg:I, 7pwo:I2
24 8p5d:LI0 217 153 0.2938 0.2166 0.3072 3.25e-20 8p60:LI0, 8p60:KI0, 7qca:LI0
25 3j79:Q 189 142 0.3063 0.2593 0.3451 3.53e-20 3jbn:AQ, 3jbo:AQ, 3jbp:AQ, 8tpu:AQ, 5umd:Q
26 3jcs:N 213 157 0.3125 0.2347 0.3185 4.36e-20 6az3:N, 8ovj:N, 8rxh:LN, 8rxx:LN, 5t2a:J
27 7azy:o 220 157 0.3187 0.2318 0.3248 4.72e-20 8aaf:r, 8agt:r, 8agu:r, 8agv:r, 8agw:r, 8agx:r, 8agz:r, 5apn:I, 5apo:I, 7b7d:LL, 8bip:LI, 8bjq:LI, 8bn3:M0, 8bqd:BD, 8bqx:BD, 8ccs:MM, 8cdl:MM, 8cdr:MM, 8ceh:MM, 8cf5:MM, 8cg8:MM, 8cgn:MM, 8civ:MM, 8cku:MM, 8cmj:MM, 5dat:M0, 5dat:m0, 5dc3:M0, 5dc3:m0, 5dge:M0, 5dge:m0, 5dgf:M0, 5dgf:m0, 5dgv:M0, 5dgv:m0, 8eub:AI, 8evp:AI, 8evq:AI, 8evr:AI, 8evs:AI, 8evt:AI, 8ewb:AI, 8ewc:AI, 5fci:M0, 5fci:m0, 5fcj:M0, 5fcj:m0, 5gak:s, 6gq1:I, 6gqb:I, 6gqv:I, 6hd7:s, 6hhq:r, 6hhq:CL, 5i4l:M0, 5i4l:m0, 6i7o:BD, 6i7o:YD, 5it7:II, 3j0l:J, 3j0q:J, 3j6x:50, 3j6y:50, 3j77:60, 3j78:60, 5juo:N, 5jup:N, 5jus:N, 5jut:N, 5juu:N, 8k2d:LI, 8k82:LI, 5lyb:M0, 5lyb:m0, 5m1j:I5, 5mc6:BD, 5mei:r, 5mei:CL, 7mpi:AI, 7mpj:AI, 6n8o:Z, 7n8b:AI, 5ndg:M0, 5ndg:m0, 5ndv:M0, 5ndv:m0, 5ndw:M0, 5ndw:m0, 7nrc:LL, 7nrd:LL, 5obm:M0, 5obm:m0, 6oig:I, 5on6:r, 5on6:CL, 7osa:uL16, 7osm:uL16, 8p8m:LN, 8p8n:LN, 8p8u:LN, 8pfr:LN, 6q8y:BD, 6qt0:q, 6qtz:q, 6r84:s, 6r86:s, 6r87:s, 6ri5:q, 7rr5:LI, 6s47:AL, 6snt:p, 6sv4:BD, 6sv4:YD, 6sv4:ZD, 6t4q:LI, 5t62:L, 5t6r:L, 6t7i:LI, 6t7t:LI, 6t83:Iy, 6t83:La, 5tbw:r, 5tbw:CL, 6tb3:BD, 5tga:M0, 5tga:m0, 5tgm:M0, 5tgm:m0, 6tnu:BD, 7too:AL10, 7top:AL10, 4u3m:M0, 4u3m:m0, 4u3n:M0, 4u3n:m0, 4u3u:M0, 4u3u:m0, 4u4n:M0, 4u4n:m0, 4u4o:M0, 4u4o:m0, 4u4q:M0, 4u4q:m0, 4u4r:M0, 4u4r:m0, 4u4u:M0, 4u4u:m0, 4u4y:M0, 4u4y:m0, 4u4z:M0, 4u4z:m0, 4u50:M0, 4u50:m0, 4u51:M0, 4u51:m0, 4u52:M0, 4u52:m0, 4u53:M0, 4u53:m0, 4u55:M0, 4u55:m0, 4u56:M0, 4u56:m0, 4u6f:M0, 4u6f:m0, 6uz7:AI, 4v4b:BI, 4v6i:BI, 4v7h:BI, 4v7r:BJ, 4v7r:DJ, 4v88:BI, 4v88:DI, 4v8t:I, 4v8y:BI, 4v8z:BI, 4v91:I, 6woo:I, 6xiq:I, 6xir:I, 8y0u:LI, 6z6j:LI, 6z6k:LI, 7zpq:BI, 7zrs:BI, 7zs5:BK, 7zuw:BI, 7zux:EI, 7zw0:LM
28 4v8m:BK 212 157 0.2938 0.2217 0.2994 1.37e-19 8ova:BK, 8ove:BK
29 6w6l:K 152 147 0.2750 0.2895 0.2993 3.63e-18
30 6rm3:LI0 216 165 0.2687 0.1991 0.2606 8.50e-15
31 8fld:BE 160 131 0.2375 0.2375 0.2901 1.38e-13 8fle:BE, 8flf:BE, 6lqm:J, 7ow7:p
32 8br8:LK 156 123 0.2250 0.2308 0.2927 2.62e-12 8brm:LK
33 8eug:I 170 133 0.2562 0.2412 0.3083 2.71e-12 8eui:I
34 5a6a:B 597 19 0.0750 0.0201 0.6316 4.7 5a69:A
35 5a6k:A 626 19 0.0750 0.0192 0.6316 5.0 5a6a:A, 5a6b:A, 5a6b:B, 5a6b:C, 5a6b:D, 5a6k:B, 5ac4:A, 5ac4:B, 5ac5:A, 5ac5:B
36 2xgt:B 433 59 0.1000 0.0370 0.2712 5.9 2xgt:A, 2xti:A, 2xti:B
37 2ash:A 361 52 0.0938 0.0416 0.2885 6.7 2ash:B, 2ash:C, 2ash:D
38 7m7k:B 432 27 0.0688 0.0255 0.4074 7.0
39 7epq:A 296 57 0.1062 0.0574 0.2982 8.0 7epq:B
40 5yjl:B 415 28 0.0688 0.0265 0.3929 8.8 5yjl:A
41 3cp5:A 116 16 0.0625 0.0862 0.6250 9.5 6cuk:A, 6cun:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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