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BioLiP
>protein
KPANKLVIVTEKILLKKIAKIIDESGAKGYTVMNTGGKGSRNVRSSGQPNTSDIEANIKFEILTETREMAEEIADRVAVK
YFNDYAGIIYICSAEVLYG

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7cyf:D 109 99 1.0000 0.9083 1.0000 6.07e-68 7cyf:E, 7cyf:F, 7egk:D, 7egk:F, 7egk:B, 7obj:A, 7obj:B, 7r2y:C, 7r31:A, 7r31:B, 7r31:C, 7r32:B, 7r32:C
2 7r30:B 102 99 0.8889 0.8627 0.8889 2.63e-55 5o3q:A, 5o3q:C, 5o3q:B, 5o3r:A, 5o3r:B, 5o3r:C, 7obj:C, 7r2y:A, 7r2y:B, 7r2z:A, 7r2z:B, 7r2z:C, 7r30:A, 7r30:C, 7r32:A
3 6ntb:C 104 93 0.5556 0.5288 0.5914 1.77e-37 6mm2:A, 6ntb:A, 6ntb:B
4 6mmo:A 91 93 0.4747 0.5165 0.5054 1.90e-26 6mmc:A, 6mmo:B, 6mmo:C, 6mmo:E, 6mmo:D, 6mmo:F, 6mmq:A, 6mmq:D, 6mmq:B, 6mmq:C, 6mmq:F, 6mmq:E
5 5d4o:A 106 96 0.2424 0.2264 0.2500 0.11 5d4n:A, 5d4n:C, 5d4o:C, 5d4o:B, 5d4p:A, 5d4p:C, 5d4p:B, 5drk:A, 5drk:B, 5ds7:A, 5ds7:C, 5ds7:B
6 5d4n:B 90 45 0.1616 0.1778 0.3556 0.12 5drk:C
7 5ux5:A 963 66 0.2323 0.0239 0.3485 1.9 5ux5:B, 5ux5:C, 5ux5:D
8 8cbc:A 455 81 0.2121 0.0462 0.2593 2.0 8c48:A, 8c48:B, 8cbc:B, 7o0e:A, 7o0e:G, 8p67:A, 8p67:B
9 7qqe:A 163 67 0.1616 0.0982 0.2388 2.2 7qqd:B, 7qqd:A
10 8rdj:C 1040 47 0.1414 0.0135 0.2979 2.7
11 4nae:A 219 34 0.1111 0.0502 0.3235 3.0 4nae:B
12 7n8n:A 197 57 0.1515 0.0761 0.2632 4.8 7lv8:B, 7lv8:A, 7lv8:F, 7lv8:E, 7lv9:B, 7lv9:A, 7lv9:F, 7lv9:E, 7n8n:C
13 7bi6:A 829 26 0.1212 0.0145 0.4615 5.2 8a9i:A, 7bi9:A, 7z74:A, 7z75:A
14 7bi2:A 1021 26 0.1212 0.0118 0.4615 5.2
15 2ii6:A 393 34 0.1111 0.0280 0.3235 7.3 2c84:A, 2ex1:A, 2ihj:A, 2ihk:A, 2ihz:A, 2iib:A, 2iiq:A, 2iiq:B, 2ilv:A, 2iy7:A, 2iy8:A, 3s44:A, 8sv2:A
16 8ip8:ia 213 58 0.1616 0.0751 0.2759 7.6 8auv:a, 8b2l:a1, 8ip9:ia, 8ipa:ia, 8ipb:ia, 8jiw:BD, 7qiy:D, 7qiz:NA, 8r57:F, 4v3p:SB, 4v7e:BD
17 4b55:A 273 36 0.1414 0.0513 0.3889 8.1 4c5p:A, 3ltw:A, 2vfc:A, 2vfc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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