Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KNYARISCTSRYVPENCVTNHQLSEMMDTSDEWIHSRTGISERRIVTQENTSDLCHQVAKQLLEKSGKQASEIDFILVAT
VTPDFNMPSVACQVQGAIGATEAFAFDISAACSGFVYALSMAEKLVLSGRYQTGLVIGGETFSKMLDWTDRSTAVLFGDG
AAGVLIEAAETPHFLNEKLQADGQRWTALTSGYTINESPFYQGHKSKTLQMEGRSIFDFAIKDVSQNILSLVTDETVDYL
LLHQASVRIIDKIARKTKISREKFLTNMDKYGNTSAASIPILLDEAVENGTLILGSQQRVVLTGFGGGLTWGSLLLTL

The query sequence (length=318) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3il5:A 320 320 0.9937 0.9875 0.9875 0.0 3il4:A, 3il4:B, 3il4:C, 3il4:D, 3il5:B, 3il5:C, 3il5:D, 3il6:A
2 5bqs:A 323 322 0.5786 0.5697 0.5714 3.42e-132 5bqs:B
3 4nhd:D 318 320 0.4151 0.4151 0.4125 1.92e-78 4nhd:A, 4nhd:B, 4nhd:C
4 8d1u:A 318 325 0.4057 0.4057 0.3969 1.99e-74 5bnm:A, 5bnr:A, 5bns:A, 5bns:B, 1ebl:A, 1ebl:B, 2eft:A, 2eft:B, 2gyo:A, 1hnd:A, 1hnh:A, 1hnj:A, 1mzs:A, 6x7r:A, 4z8d:A, 4z8d:B
5 8vda:A 311 320 0.4245 0.4341 0.4219 3.10e-71
6 6kvs:A 313 312 0.3805 0.3866 0.3878 1.72e-69 6kvs:B
7 4x0o:E 360 318 0.3899 0.3444 0.3899 2.85e-68 5kp2:B, 5v0p:A, 5v0p:B, 4x0o:A, 4x0o:B, 4x0o:D, 4x0o:F, 4x0o:G, 4x0o:H
8 3h77:B 338 321 0.3302 0.3107 0.3271 2.52e-49 3h77:A, 3h78:A, 3h78:B
9 1mzj:A 334 326 0.3050 0.2904 0.2975 7.51e-45 1mzj:B
10 2qnx:A 334 318 0.3113 0.2964 0.3113 2.36e-44 2qnx:B, 2qny:A, 2qny:B, 2qnz:A, 2qnz:B, 2qo0:A, 2qo0:B, 2qo1:A, 2qo1:B, 2qx1:A, 2qx1:B, 1u6s:A, 1u6s:B
11 5yo9:B 366 350 0.2642 0.2295 0.2400 1.26e-15 5yoa:B
12 3s20:A 344 294 0.2296 0.2122 0.2483 5.95e-15 6b2u:A, 4ku2:B, 4ku3:B, 4ku5:B, 3s20:B, 3s21:A, 3s23:A, 5vxe:A, 5vxg:A, 5vxi:A
13 6et3:A 309 292 0.1950 0.2006 0.2123 6.50e-08
14 1xes:A 387 310 0.2390 0.1964 0.2452 1.67e-07 1xes:B, 1xes:C, 1xes:D, 1xet:B, 1xet:C, 1xet:D
15 1chw:A 389 294 0.2296 0.1877 0.2483 5.15e-05 1bq6:A, 1cgk:A, 1cgz:A, 1chw:B, 1cml:A, 1d6h:A, 1u0w:A, 1u0w:B, 1u0w:C, 1u0w:D
16 5w8q:A 379 318 0.2107 0.1768 0.2107 1.80e-04 5w8q:B, 5wc4:A, 5wc4:B
17 6gw3:A 383 180 0.1604 0.1332 0.2833 2.36e-04 6gw3:B, 6gw3:C, 6gw3:D, 7w6g:C, 7w6g:D
18 5gk1:A 379 356 0.2264 0.1900 0.2022 8.90e-04 5gk1:C
19 6op5:A 383 307 0.2264 0.1880 0.2345 0.001 6op5:B
20 2d3m:A 405 304 0.2138 0.1679 0.2237 0.001 2d3m:B, 2d52:A, 2d52:B
21 1ee0:A 376 291 0.2013 0.1702 0.2199 0.002 1ee0:B
22 6et3:B 275 85 0.0755 0.0873 0.2824 0.002
23 3awj:A 380 317 0.2453 0.2053 0.2461 0.003
24 7bur:B 389 296 0.2327 0.1902 0.2500 0.005 7bur:A, 8jrd:A, 8jrd:B
25 1z1f:A 388 183 0.1541 0.1263 0.2678 0.007
26 3wd7:A 401 93 0.0849 0.0673 0.2903 0.014 7cct:A, 6l7j:A, 3wd7:B
27 8v8m:A 389 311 0.2296 0.1877 0.2347 0.021 8v8m:C
28 6j1m:A 381 182 0.1384 0.1155 0.2418 0.091 6j1m:B, 6j1n:A, 6j1n:B
29 8b3c:B 383 86 0.0723 0.0601 0.2674 0.14 8b32:A, 8b32:B, 8b35:A, 8b35:B, 8b3c:A
30 2hcs:A 487 46 0.0472 0.0308 0.3261 0.32 2hcn:A
31 2hfz:A 608 46 0.0472 0.0247 0.3261 0.45
32 5wx6:B 376 93 0.0723 0.0612 0.2473 0.47 5wx3:A, 5wx3:B, 5wx3:D, 5wx6:A, 5wx6:C, 5wx6:D, 5wx7:A, 5wx7:B, 5wx7:C, 5wx7:D
33 7yj6:A 390 274 0.1824 0.1487 0.2117 0.66 7yj5:A, 7yj6:B, 7yj7:A, 7yj8:A, 7yj9:A, 7yja:A, 7yja:B, 7yjb:A
34 7lbv:A 380 89 0.0818 0.0684 0.2921 1.6
35 7vf0:B 396 148 0.1038 0.0833 0.2230 2.2 7vez:A, 7vez:B, 7vez:C, 7vez:D, 7vf0:A, 7vf0:C, 7vf0:D
36 4mtp:C 585 46 0.0472 0.0256 0.3261 2.6
37 4mtp:D 546 46 0.0472 0.0275 0.3261 2.7
38 6j9f:D 1215 32 0.0409 0.0107 0.4062 3.5 6j9e:D
39 4k6m:A 888 46 0.0472 0.0169 0.3261 3.7 4hdg:A, 4hdg:B, 4hdh:A, 4hdh:B, 4k6m:B, 4mtp:A, 4mtp:B
40 6ld3:A 578 50 0.0566 0.0311 0.3600 4.2 6ld1:A, 6ld2:A, 6ld4:A, 6ld5:A, 5wz3:A
41 8fmw:Ac 81 64 0.0535 0.2099 0.2656 4.2 8fn2:c
42 3wy0:B 377 337 0.2233 0.1883 0.2107 5.2 3wxy:A, 3wxy:B, 3wy0:A
43 6i7p:A 883 50 0.0566 0.0204 0.3600 5.4 5goz:A, 5goz:B, 5goz:C, 5gp1:A, 5gp1:B, 5gp1:C, 6i7p:B, 6i7p:C, 6i7p:D, 6i7p:E, 6i7p:F, 5kqr:A, 5kqs:A, 5m2x:A, 5m2x:B, 5m2x:C, 5m2x:D, 5m2x:E, 5m2x:F, 5m2z:A, 5m2z:C, 5m2z:B, 5m2z:D, 5m2z:E, 5m2z:F, 5m5b:A, 5m5b:B, 5mrk:A, 5mrk:B, 5nju:A, 5nju:B, 5njv:A, 5njv:B, 5njv:C, 5njv:D, 8pem:A, 5tfr:A, 5tfr:B, 5tmh:A, 5tmh:B, 5u0b:A, 5u0b:B, 5u0c:A, 5u0c:B, 5u0c:C, 5u0c:D, 5u0c:E, 5u0c:F, 5u0c:G, 5u0c:H, 5ulp:A, 5ulp:B, 6ux2:B, 5vim:A, 5vim:B, 6wcz:B, 5wxb:A, 5wz1:A, 5wz1:B, 5wz1:C, 5wz1:D, 5wz1:E, 5wz1:F, 5wz1:G, 5wz1:H, 5wz2:A, 5wz2:B, 5wz2:C
44 5b48:B 286 68 0.0692 0.0769 0.3235 6.9
45 8idt:J 223 61 0.0503 0.0717 0.2623 7.0 8fkr:SQ, 8fks:SQ, 8fkt:SQ, 8fku:SQ, 8fkv:SQ, 8fkw:SQ, 8fkx:SQ, 8fky:SQ, 8fkz:SQ, 8fl0:SQ, 8fl2:SQ, 8fl3:SQ, 8fl4:SQ, 8fl6:SQ, 8fl7:SQ, 8fl9:SQ, 8idy:J, 8ie3:J, 8ine:J, 8inf:J, 8ink:v, 8ipd:v, 8ipx:v, 8ipy:v, 8ir1:v, 8ir3:v
46 8fla:SQ 127 61 0.0503 0.1260 0.2623 8.2 8flb:SQ, 8flc:SQ, 8fld:SQ, 8fle:SQ, 8flf:SQ
47 4if2:A 324 40 0.0409 0.0401 0.3250 9.0
48 7bjv:C 252 109 0.0786 0.0992 0.2294 9.1 7bju:A, 7bjv:A, 7bjv:B, 1g2n:A, 3ixp:A, 1r1k:A, 1r20:A, 2r40:A, 4umm:F

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218