Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KNVVIYADGVYDMLHLGHMKQLEQAKKLFENTTLIVGVTSDNETKLFKGQVVQTLEERTETLKHIRWVDEIISPCPWVVT
PEFLEKYKIDYVAHDDDIYAWLKRAGKFKATQRTEGVSTTDLIVRILK

The query sequence (length=128) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4zcs:A 141 137 1.0000 0.9078 0.9343 5.07e-90 7pui:A, 7pve:A, 7pvf:A, 7pvg:A, 7py9:A, 7pya:A, 7pyb:A, 7pyc:A, 7q2i:A, 7q2k:A, 7q2l:A, 7q2m:A, 7q2v:A, 7q3m:A, 7q3w:A, 7q9v:A, 7q9w:A, 7qa7:A, 7qad:A, 7qd3:A, 7qvn:A, 7qvo:A, 7z9v:A, 4zcp:A, 4zcq:A, 4zcr:A, 4zcs:C, 4zcs:E, 4zcs:B, 4zcs:D, 4zcs:F
2 4mvd:B 253 137 0.5312 0.2688 0.4964 5.18e-45 3hl4:A, 3hl4:B, 4mvc:A, 4mvc:B, 4mvd:A, 4mvd:D, 4mvd:C, 4mvd:F, 4mvd:E, 4mvd:H, 4mvd:G
3 4xsv:A 306 136 0.4531 0.1895 0.4265 3.26e-31 3elb:A
4 4xsv:A 306 134 0.3594 0.1503 0.3433 6.05e-18 3elb:A
5 1coz:A 126 125 0.3203 0.3254 0.3280 1.04e-11 1coz:B, 1n1d:A, 1n1d:B, 1n1d:C, 1n1d:D
6 5x3d:A 126 101 0.1953 0.1984 0.2475 8.06e-04
7 3glv:B 122 44 0.1328 0.1393 0.3864 0.002
8 1s4m:A 277 87 0.2109 0.0975 0.3103 0.38 1s4m:B, 1t6x:A, 1t6x:B, 1t6y:A, 1t6y:B, 1t6z:A, 1t6z:B
9 5ts2:A 165 67 0.1406 0.1091 0.2687 0.99 4ruk:A, 4ruk:F, 4ruk:B, 4ruk:E, 4ruk:C, 4ruk:D, 5ts2:B, 5ts2:C, 5ts2:D, 5ts2:E, 5ts2:F, 3x1j:A, 3x1j:C, 3x1j:B, 3x1k:A, 3x1k:B, 3x1k:C, 3x1k:D, 3x1k:E, 3x1k:F, 3x1m:A, 3x1m:C, 3x1m:B
10 6aje:A 378 62 0.1562 0.0529 0.3226 1.1 6aj5:A, 6aj5:B, 6aj5:C, 6aj5:D, 6aje:B, 6aje:C, 6aje:D
11 5ti1:H 430 32 0.0859 0.0256 0.3438 1.7 5ti1:A, 5ti1:B, 5ti1:C, 5ti1:D, 5ti1:E, 5ti1:F, 5ti1:G
12 1od6:A 155 33 0.1016 0.0839 0.3939 2.6
13 2rvn:A 83 44 0.1172 0.1807 0.3409 2.6
14 3o05:A 261 77 0.1484 0.0728 0.2468 2.9 3o05:B, 3o05:C
15 6gyf:B 366 63 0.1562 0.0546 0.3175 4.1 6gye:A, 6gye:B, 6gyf:A, 6gzo:A, 6gzo:B
16 4bkm:A 304 66 0.1328 0.0559 0.2576 4.9 4bkm:B, 4bkm:C, 4bkm:D
17 3nd6:A 152 60 0.1172 0.0987 0.2500 5.0 3nd6:B, 3nd6:C, 3nd6:D, 3nd6:E, 3nd6:F, 3nd7:A, 3nd7:B, 3nd7:C, 3nd7:D, 3nd7:E, 3nd7:F
18 2pbj:A 274 87 0.2031 0.0949 0.2989 6.0 2pbj:B, 2pbj:C, 2pbj:D, 1z9h:A, 1z9h:B, 1z9h:C, 1z9h:D
19 8uxq:A 170 44 0.1172 0.0882 0.3409 9.5 3fdt:A

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218