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BioLiP
>protein
KNVLKIRRRKMNHHKYRKLVKRTRFLRRKVREGRLKKKQIKFEKDLKRIWLKAGLKEAPENWQTPKIYLKNK

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7pnv:3 72 72 1.0000 1.0000 1.0000 5.02e-45 7pnt:3, 7pnu:3, 7pnw:3
2 7l08:A3 72 72 0.8889 0.8889 0.8889 6.64e-41 7a5f:d6, 7a5g:d6, 7a5i:d6, 7a5k:d6, 8any:A3, 8csq:3, 8csr:3, 8css:3, 8cst:3, 8csu:3, 3j9m:A3, 8k2a:Sn, 6nu2:A3, 6nu3:A3, 7og4:A3, 8oir:AD, 8ois:AD, 7p2e:3, 7pnx:3, 7pny:3, 7pnz:3, 7po0:3, 7po1:3, 7po2:3, 7po3:3, 7qi4:A3, 7qi5:A3, 7qi6:A3, 8qrk:3, 8qrl:3, 8qrm:3, 8qrn:3, 6rw4:3, 6rw5:3, 6vlz:A3, 6vmi:A3, 8xt0:Sn, 8xt2:Sn, 6zm5:A3, 6zm6:A3, 6zs9:A3, 6zsa:A3, 6zsb:A3, 6zsc:A3, 6zsd:A3, 6zse:A3, 6zsg:A3
3 5aj3:n 72 72 0.8750 0.8750 0.8750 9.13e-41 5aj4:An, 6gaw:An, 6gaz:An, 7nqh:An, 7nql:An, 7nsi:An, 7nsj:An, 8oin:AD, 8oip:AD, 6ydp:An, 6ydw:An
4 3jd5:n 72 72 0.8611 0.8611 0.8611 9.71e-39 6neq:n, 6nf8:n
5 1e55:A 492 48 0.1667 0.0244 0.2500 0.53 1e1f:A, 1e1f:B, 1e4n:A, 1e4n:B, 1e55:B, 1e56:A, 1e56:B, 1h49:B, 1h49:A, 1v08:A, 1v08:B
6 7nvm:H 528 44 0.1944 0.0265 0.3182 0.59 8i1u:G, 8i1u:O, 7nvl:H, 7nvl:h, 7nvm:h, 7nvn:H, 7nvn:h, 8sfe:h, 8sfe:H, 8sff:H, 8sff:h, 8sg8:H, 8sg8:h, 8sg9:H, 8sg9:h, 8sgc:H, 8sgc:h, 8sgl:H, 8sgl:h, 8sgq:h, 8sgq:H, 8sh9:H, 8sh9:h, 8sha:H, 8sha:h, 8shd:H, 8shd:h, 8she:H, 8she:h, 8shf:H, 8shf:h, 8shg:H, 8shg:h, 8shl:H, 8shl:h, 8shn:H, 8shn:h, 8sho:H, 8sho:h, 8shp:H, 8shp:h, 8shq:H, 8shq:h, 8sht:H, 8sht:h, 7trg:C, 7ttn:C, 7ttt:C, 7tub:C, 7x0s:H, 7x0s:O, 7x0v:H, 7x0v:O, 7x3j:H, 7x3j:h, 7x3u:h, 7x3u:H
7 2nz2:A 402 32 0.1389 0.0249 0.3125 5.1
8 4fe7:A 380 10 0.1111 0.0211 0.8000 8.1
9 6v0t:A 402 63 0.2361 0.0423 0.2698 8.4 3mq3:A, 2pnq:A, 2pnq:B
10 5ud5:A 86 17 0.1389 0.1163 0.5882 8.9 5ud5:B, 5v6x:A, 5v6x:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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