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BioLiP
>protein
KNVKCFNCGKEGHTARNCRAPRKKGCWKCGKEGHQMKDCTERQAN

The query sequence (length=45) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6rwg:A 157 45 0.9333 0.2675 0.9333 1.20e-26 1a1t:A, 1aaf:A, 1bj6:A, 2buo:A, 1esk:A, 2exf:A, 1f6u:A, 5i1r:A, 2jzw:A, 2l4l:A, 2m3z:A, 1mfs:A, 1q3y:A, 1q3z:A, 7r7p:I, 7r7p:L
2 2ec7:A 49 44 0.6889 0.6327 0.7045 1.44e-18
3 2a51:A 39 39 0.4889 0.5641 0.5641 7.16e-12
4 2bl6:A 37 35 0.4222 0.5135 0.5429 1.38e-06
5 7c4c:A 332 38 0.4222 0.0572 0.5000 1.54e-04 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
6 7c4c:A 332 37 0.3111 0.0422 0.3784 2.5 7c42:A, 7c43:A, 7c45:A, 7c47:A, 7c4b:A
7 5w0n:A 379 23 0.2889 0.0343 0.5652 0.006 5w0m:A, 5w0m:C, 5w0n:B
8 5w0b:A 334 20 0.2667 0.0359 0.6000 0.013
9 7s7b:F 352 14 0.2222 0.0284 0.7143 0.020 7s7b:B, 7s7c:B
10 7s7b:F 352 17 0.2000 0.0256 0.5294 0.076 7s7b:B, 7s7c:B
11 2li8:A 63 41 0.3111 0.2222 0.3415 0.18
12 2ihx:A 50 43 0.3556 0.3200 0.3721 0.20
13 2cqf:A 63 40 0.2889 0.2063 0.3250 0.25
14 5udz:A 139 37 0.2889 0.0935 0.3514 0.30 8ops:B, 8opt:B, 8ost:B, 3trz:A, 3trz:B, 3trz:C, 3trz:D, 3trz:E, 3trz:F, 3ts0:A, 3ts0:B, 3ts2:A, 3ts2:B, 5udz:B
15 6lum:A 539 25 0.1778 0.0148 0.3200 0.66 6lum:J, 6lum:P
16 2ysa:A 55 14 0.1778 0.1455 0.5714 0.79
17 2ysa:A 55 14 0.2000 0.1636 0.6429 0.98
18 6bk8:O 229 17 0.2000 0.0393 0.5294 0.87
19 6bk8:O 229 24 0.2444 0.0480 0.4583 2.9
20 6exn:c 204 17 0.2000 0.0441 0.5294 0.94
21 6exn:c 204 20 0.2222 0.0490 0.5000 3.6
22 8opp:A 670 16 0.2000 0.0134 0.5625 1.1
23 8opt:A 783 16 0.2000 0.0115 0.5625 1.1 8ops:A, 5w0m:B, 5w0n:C, 5w0o:A, 5w0o:B
24 3nyb:B 64 21 0.1778 0.1250 0.3810 2.9
25 1kea:A 217 25 0.2889 0.0599 0.5200 4.2
26 3zt9:A 192 26 0.2000 0.0469 0.3462 4.3
27 7b9v:c 37 17 0.2000 0.2432 0.5294 4.4
28 4f3x:A 476 26 0.1778 0.0168 0.3077 6.8 4f3x:B, 4f3x:C, 4f3x:D
29 1ece:A 358 25 0.1778 0.0223 0.3200 9.5 1ece:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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