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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KNTTTYDYIVVGGGTSGLVVANRLSENPDVSVLLLEAGASVFNNPDVTNANGYGLAFGSAIDWQYQSINQSYAGGKQQVL
RAGKALGGTSTINGMAYTRAEDVQIDVWQKLGNEGWTWKDLLPYYLKSENLTAPTSSQVAAGAAYNPAVNGKEGPLKVGW
SGSLASGNLSVALNRTFQAAGVPWVEDVNGGKMRGFNIYPSTLDVDLNVREDAARAYYFPYDDRKNLHLLENTTANRLFW
KNGSAEEAIADGVEITSADGKVTRVHAKKEVIISAGALRSPLILELSGVGNPTILKKNNITPRVDLPTVGENLQDQFNNG
MAGEGYGVLAGASTVTYPSISDVFGNETDSIVASLRSQLSDYAAATVKVSNGHMKQEDLERLYQLQFDLIVKDKVPIAEI
LFHPGGGNAVSSEFWGLLPFARGNIHISSNDPTAPAAINPNYFMFEWDGKSQAGIAKYIRKILRSAPLNKLIAKETKPGL
SEIPATAADEKWVEWLKANYRSNFHPVGTAAMMPRSIGGVVDNRLRVYGTSNVRVVDASVLPFQVCGHLVSTLYAVAERA
SDLIKEDA

The query sequence (length=568) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ynt:A 570 567 0.9982 0.9947 1.0000 0.0 7vkd:A, 7vkf:A, 7vzp:A, 7vzp:B, 7vzs:A, 7vzs:B, 4ynu:A
2 6xut:A 589 586 0.3856 0.3718 0.3737 2.81e-122 6xuu:A, 6xuv:A
3 1cf3:A 581 577 0.3627 0.3546 0.3570 1.72e-103 1gal:A, 8jpz:A, 8jpz:B, 5nit:A, 5niw:A, 3qvp:A, 3qvr:A
4 1gpe:B 587 572 0.3486 0.3373 0.3462 1.26e-100 1gpe:A
5 6ze7:B 586 613 0.3187 0.3089 0.2953 3.54e-64 7aa2:A, 7aa2:B, 6ze2:A, 6ze2:B, 6ze3:A, 6ze4:A, 6ze4:B, 6ze5:A, 6ze5:B, 6ze6:A, 6ze6:B, 6ze7:A
6 3fim:B 565 582 0.2993 0.3009 0.2921 8.52e-57 5oc1:A
7 6o9n:A 613 628 0.3204 0.2969 0.2898 7.85e-54 6o9n:B
8 4h7u:A 577 604 0.3415 0.3362 0.3212 3.56e-53
9 8il4:C 619 633 0.3187 0.2924 0.2859 2.12e-52 8il4:A, 8il4:B, 8il4:D
10 8bxl:B 590 603 0.2923 0.2814 0.2753 3.93e-47 8bxl:C, 8bxl:D, 8bxl:A, 8bxl:F, 8bxl:E
11 8il5:B 595 635 0.3046 0.2908 0.2724 1.40e-44
12 3q9t:A 577 606 0.2729 0.2686 0.2558 1.18e-42 3q9t:B, 3q9t:C, 5zu2:A, 5zu2:B, 5zu2:C, 5zu3:A, 5zu3:B, 5zu3:C
13 5ncc:A 578 590 0.2993 0.2941 0.2881 1.44e-42 7av4:AAA, 5ncc:B, 5ncc:C, 5ncc:D, 5ncc:E, 5ncc:F, 7r33:A, 7r33:B, 7r34:A, 7r34:B, 7r35:A, 7r35:B, 7r36:A, 7r36:B, 6yru:AAA, 6yrv:AAA, 6yrx:AAA, 6yrz:AAA, 6ys1:AAA, 6ys2:AAA, 6zh7:A, 6zh7:B
14 5hsa:A 662 667 0.2975 0.2553 0.2534 2.97e-42 5hsa:B, 5hsa:C, 5hsa:D, 5hsa:E, 5hsa:F, 5hsa:G, 5hsa:H, 5i68:A
15 3t37:A 509 554 0.2570 0.2868 0.2635 4.01e-39 4ha6:A
16 8b7s:A 458 568 0.2729 0.3384 0.2729 7.57e-37
17 4udq:A 525 586 0.2746 0.2971 0.2662 2.13e-35 6f97:A, 6f97:B, 4udp:A, 4udp:B, 4udq:B, 4udr:A, 4udr:B
18 4mjw:A 532 582 0.2887 0.3083 0.2818 3.66e-33 2jbv:A, 2jbv:B, 3ljp:A, 3ljp:B, 4mjw:B, 3nne:A, 3nne:B, 3nne:C, 3nne:D, 3nne:E, 3nne:F, 3nne:G, 3nne:H
19 6h3o:F 650 324 0.1813 0.1585 0.3179 1.89e-31 6h3g:A, 6h3g:B, 6h3g:C, 6h3g:F, 6h3g:D, 6h3g:E, 6h3g:G, 6h3g:H, 6h3o:A, 6h3o:B, 6h3o:C, 6h3o:D, 6h3o:E, 6h3o:G, 6h3o:H, 8il5:A
20 6h3o:F 650 89 0.0634 0.0554 0.4045 7.51e-14 6h3g:A, 6h3g:B, 6h3g:C, 6h3g:F, 6h3g:D, 6h3g:E, 6h3g:G, 6h3g:H, 6h3o:A, 6h3o:B, 6h3o:C, 6h3o:D, 6h3o:E, 6h3o:G, 6h3o:H, 8il5:A
21 6jby:A 521 555 0.2553 0.2783 0.2613 5.96e-14 7bwp:A, 7cgs:A, 5eb4:A, 5eb4:B, 5eb5:A, 5eb5:B, 8jm0:A, 8jm1:A, 8jm2:A, 8jm3:A, 8jm4:A, 8jm5:B, 8jm6:A, 8jm7:A, 8jm8:A, 6lqy:A, 6lr8:A
22 7yx4:A 650 360 0.1479 0.1292 0.2333 5.46e-13 7ptv:A, 7ptv:B, 7yx4:B, 7yx5:A
23 7yx4:A 650 49 0.0405 0.0354 0.4694 5.32e-04 7ptv:A, 7ptv:B, 7yx4:B, 7yx5:A
24 3gdn:A 521 560 0.2394 0.2610 0.2429 1.56e-12 3gdn:B, 3gdp:A, 3gdp:B, 1ju2:A, 1ju2:B
25 3red:A 521 563 0.2500 0.2726 0.2522 2.54e-12 3red:B, 3red:C, 3red:D, 3red:E, 3red:F, 3red:G, 3red:H, 3red:I, 3red:J, 3red:K, 3red:L
26 8orh:A 649 355 0.1479 0.1294 0.2366 3.35e-11 8orh:B, 8ors:A, 8ors:B, 7yx3:A, 7yx3:B, 4z24:A, 4z24:B, 4z25:A, 4z25:B, 4z25:C, 4z25:D, 4z25:E, 4z25:F, 4z25:G, 4z25:H, 4z25:I, 4z25:J, 4z25:K, 4z25:L, 4z26:A, 4z26:B, 4z26:C, 4z26:D, 4z26:E, 4z26:F, 4z26:G, 4z26:H
27 8orh:A 649 49 0.0405 0.0354 0.4694 0.004 8orh:B, 8ors:A, 8ors:B, 7yx3:A, 7yx3:B, 4z24:A, 4z24:B, 4z25:A, 4z25:B, 4z25:C, 4z25:D, 4z25:E, 4z25:F, 4z25:G, 4z25:H, 4z25:I, 4z25:J, 4z25:K, 4z25:L, 4z26:A, 4z26:B, 4z26:C, 4z26:D, 4z26:E, 4z26:F, 4z26:G, 4z26:H
28 1kdg:B 546 597 0.2430 0.2527 0.2312 9.32e-08 1kdg:A, 1naa:A, 1naa:B
29 4qi7:A 805 473 0.2025 0.1429 0.2431 2.46e-05 4qi7:B
30 4qi6:A 800 609 0.2641 0.1875 0.2463 1.00e-04 4qi3:A, 4qi3:B, 4qi4:A, 4qi5:A
31 2z5x:A 513 83 0.0528 0.0585 0.3614 0.14 2bxr:A, 2bxr:B, 2bxs:A, 2bxs:B, 2z5y:A
32 6cr0:A 430 59 0.0440 0.0581 0.4237 0.24
33 1rp0:A 278 34 0.0264 0.0540 0.4412 0.28 1rp0:B
34 3kpf:A 467 51 0.0352 0.0428 0.3922 0.34 1b37:A, 1b37:B, 1b37:C, 1b5q:A, 1b5q:B, 1b5q:C, 1h81:A, 1h81:B, 1h81:C, 1h82:A, 1h82:B, 1h82:C, 1h83:A, 1h83:B, 1h83:C, 1h84:A, 1h84:B, 1h84:C, 1h86:A, 1h86:B, 1h86:C, 3kpf:B, 3ku9:A, 3ku9:B, 3l1r:A, 3l1r:B
35 1o5w:C 512 83 0.0493 0.0547 0.3373 0.38 1o5w:A, 1o5w:B, 1o5w:D
36 1kht:B 191 53 0.0335 0.0995 0.3585 0.39 1kht:C
37 7qfd:A 458 108 0.0511 0.0633 0.2685 0.49 7qva:A
38 7qf8:A 494 305 0.1215 0.1397 0.2262 0.60
39 3ng7:X 427 33 0.0352 0.0468 0.6061 0.85 3k7m:X, 3k7q:X, 3k7t:A, 3k7t:B, 3ngc:X, 3nh3:X, 3nho:X, 3nk0:X, 3nk1:X, 3nk2:X, 3nn0:X, 3nn6:X
40 6knb:A 450 83 0.0405 0.0511 0.2771 1.0 6knc:A
41 6n7f:A 451 31 0.0282 0.0355 0.5161 1.1 6n7f:B, 6n7f:C, 6n7f:D
42 4a69:A 369 63 0.0246 0.0379 0.2222 2.4 4a69:B
43 5glg:A 471 36 0.0246 0.0297 0.3889 3.9 6ku6:B, 6ku6:H, 5zyn:B
44 1i8t:A 367 47 0.0299 0.0463 0.3617 4.2 1i8t:B
45 7aaw:A 315 51 0.0317 0.0571 0.3529 4.4 7aaw:B
46 3h86:B 191 68 0.0299 0.0890 0.2500 4.7 3h86:A, 3h86:C, 3h86:G
47 3fpz:A 311 32 0.0246 0.0450 0.4375 4.8 3fpz:B, 4y4l:A, 4y4l:B, 4y4l:C, 4y4l:D
48 7v94:A 1076 92 0.0423 0.0223 0.2609 5.7 7v93:A
49 4oic:B 305 79 0.0335 0.0623 0.2405 5.8
50 6brd:A 474 31 0.0282 0.0338 0.5161 6.4 6brd:B, 6brd:C, 5vqb:A, 5vqb:B, 5vqb:C
51 2dki:A 615 30 0.0194 0.0179 0.3667 6.5 2dkh:A
52 7qow:B 505 27 0.0194 0.0218 0.4074 8.0 3e2d:A, 3e2d:B, 7qow:A, 7qp8:A, 7qp8:B, 6qsq:A, 6t26:A, 6t26:B, 7yzz:A, 7yzz:B, 7z00:B
53 8grj:B 531 68 0.0299 0.0320 0.2500 9.4 6a2u:B, 6a2u:D, 8grj:D, 8hdd:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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