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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KNSEMKINLRLEQFKKELVLYEQKKFKEYGMKIDEITKENKKLANEIGRLRERWDSLV

The query sequence (length=58) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5kc1:F 61 58 1.0000 0.9508 1.0000 1.11e-35 5kc1:D, 5kc1:B, 5kc1:L, 5kc1:J
2 1q4s:A 142 37 0.2586 0.1056 0.4054 0.13 1q4s:B, 1q4t:A, 1q4t:B, 1q4u:A, 1q4u:B, 3r32:A, 3r32:B, 3r34:A, 3r34:B, 3r35:A, 3r35:B, 3r37:A, 3r37:B, 3r3a:A, 3r3a:B, 3r3b:A, 3r3b:B, 3r3c:A, 3r3c:B, 3r3d:A, 3r3d:B, 3r3f:A, 3r3f:B, 3tea:A, 3tea:B
3 6ax8:A 509 41 0.2759 0.0314 0.3902 1.1 5xet:C
4 6fah:E 393 43 0.3103 0.0458 0.4186 1.1 6fah:A
5 8pz4:A 466 31 0.1552 0.0193 0.2903 1.4 7acg:A, 4afk:A, 4azl:A, 4azl:B, 4b61:A, 4b61:B, 8q2o:A, 3rbh:A, 3rbh:B, 8rqp:A, 4xnk:A, 4xnl:A
6 3fxr:A 296 20 0.1552 0.0304 0.4500 1.4 3fxu:A, 3fxu:B, 3n6u:A
7 3rbh:D 410 31 0.1552 0.0220 0.2903 1.5 3rbh:C
8 8c29:R 219 28 0.2241 0.0594 0.4643 2.6 8c29:r
9 9ax8:z 509 37 0.2069 0.0236 0.3243 3.9 3jcj:f, 3jcn:b, 5me0:W, 5me1:W, 6o7k:f, 6o9k:z
10 6fli:A 310 27 0.2241 0.0419 0.4815 4.0 6fli:B, 6fli:C, 6fli:D, 6fli:E, 6fvs:D
11 7mqa:SS 350 56 0.2586 0.0429 0.2679 7.5
12 6mve:A 680 22 0.1552 0.0132 0.4091 7.7 6cgl:A, 6cgl:B, 6cgn:A, 6mt9:A, 6mv9:A, 6mv9:B, 6mw3:D, 6mw3:C, 6myx:C, 6myx:D, 6myx:I, 6myx:J
13 1czq:A 45 27 0.1897 0.2444 0.4074 9.0 1gzl:A, 1gzl:B, 3l35:A, 3l35:C, 3l35:B, 3l36:A, 3l37:A, 3mgn:D, 3mgn:F, 3mgn:A, 3mgn:C, 3mgn:E, 3mgn:B, 6psa:A, 2q3i:A, 2r3c:A, 2r3c:B, 2r5b:A, 2r5b:C, 2r5b:B, 2r5d:A, 2r5d:C, 2r5d:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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