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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KNRAARVRVSKGDKPVTYEEAHAPHYIAHRKGWLSLHTGNLDGEDHAAERTVEDVFLRKFMLGTFPGCLADQLVLKRRAN
QLEICALVLRQLPPHKFYFLVGYSETLLSHFYKCPVHLHLQTVPSKVVYKYI

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7pnt:C 132 132 0.9242 0.9242 0.9242 7.13e-92 7pnu:C, 7pnv:C, 7pnw:C
2 7a5f:C6 132 132 0.9394 0.9394 0.9394 1.15e-91 7a5g:C6, 7a5i:C6, 7a5k:C6, 5aj3:C, 5aj4:AC, 8any:AC, 6gaw:AC, 6gaz:AC, 3j9m:AC, 3jd5:C, 8k2a:SZ, 7l08:AC, 6neq:C, 7nqh:AC, 7nql:AC, 7nsi:AC, 7nsj:AC, 6nu2:AC, 6nu3:AC, 7og4:AC, 8oin:AC, 8oip:AC, 8oir:AC, 8ois:AC, 7p2e:C, 7pnx:C, 7pny:C, 7pnz:C, 7po0:C, 7po1:C, 7po2:C, 7po3:C, 7qi4:AC, 7qi5:AC, 7qi6:AC, 8qrk:C, 8qrl:C, 8qrm:C, 8qrn:C, 6rw4:C, 6rw5:C, 6vlz:AC, 6vmi:AC, 8xt0:SZ, 8xt2:SZ, 6ydp:AC, 6ydw:AC, 6zm5:AC, 6zm6:AC, 6zs9:AC, 6zsa:AC, 6zsb:AC, 6zsc:AC, 6zsd:AC, 6zse:AC, 6zsg:AC
3 7jgr:E 398 30 0.0985 0.0327 0.4333 0.42 7jgs:E, 7jk2:E, 7jk3:E, 7jk4:E, 7jk5:E, 7jk6:E
4 8fgw:C 1342 26 0.0909 0.0089 0.4615 1.4 8fh3:C
5 7suk:NB 142 42 0.1136 0.1056 0.3571 1.5 7ajt:UC, 7d5s:5H, 7d5t:5H, 7d63:5H, 6ke6:5H, 6lqp:5H, 6lqq:5H, 6lqr:5H, 6lqs:5H, 6lqt:5H, 6lqu:5H, 6lqv:5H, 5wlc:NB, 7wtl:UC, 6zqa:UC, 6zqb:UC, 6zqc:UC, 6zqf:UC, 6zqg:UC
6 8ro2:C 908 52 0.1288 0.0187 0.3269 5.2 7aav:r, 7abf:r, 7abg:r, 7abi:r, 6ah0:C, 6ahd:C, 8c6j:C, 8ch6:b, 7dvq:C, 6ff4:B, 6ff7:B, 9fmd:C, 8h6e:5C, 8h6j:5C, 8h6k:5C, 8h6l:5C, 8i0p:C, 8i0r:C, 8i0s:C, 8i0t:C, 8i0u:C, 8i0v:C, 8i0w:C, 6icz:C, 6id0:C, 6id1:C, 8q7q:C, 8q7v:C, 8q7w:C, 8q7x:C, 8q91:C, 6qdv:C, 8qp8:C, 7qtt:b, 6qw6:5C, 6qx9:5C, 8rc0:C, 7w59:C, 7w5a:C, 7w5b:C, 5xjc:C, 8y6o:D, 5yzg:C, 5z56:C, 5z57:C, 5z58:C, 6zym:B
7 7rk0:B 262 26 0.0758 0.0382 0.3846 8.7 7rk0:A, 7rk0:C, 7rk0:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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