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BioLiP
>protein
KNRAARVRVAKGNKPVSYEEAHAPHYIAHRKGWLSLHTGNLDGEDHAAERTLEDVFLRKFMMGTFPGCLADQIVLKRRAN
QVDICALVLRQLPAHKFYFLVGYSETLLSHFYKCPVRLHLQTVPSKVVYKYI

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7pnt:C 132 132 1.0000 1.0000 1.0000 6.50e-98 7pnu:C, 7pnv:C, 7pnw:C
2 7a5f:C6 132 132 0.8864 0.8864 0.8864 1.97e-88 7a5g:C6, 7a5i:C6, 7a5k:C6, 5aj3:C, 5aj4:AC, 8any:AC, 6gaw:AC, 6gaz:AC, 3j9m:AC, 3jd5:C, 8k2a:SZ, 7l08:AC, 6neq:C, 7nqh:AC, 7nql:AC, 7nsi:AC, 7nsj:AC, 6nu2:AC, 6nu3:AC, 7og4:AC, 8oin:AC, 8oip:AC, 8oir:AC, 8ois:AC, 7p2e:C, 7pnx:C, 7pny:C, 7pnz:C, 7po0:C, 7po1:C, 7po2:C, 7po3:C, 7qi4:AC, 7qi5:AC, 7qi6:AC, 8qrk:C, 8qrl:C, 8qrm:C, 8qrn:C, 6rw4:C, 6rw5:C, 6vlz:AC, 6vmi:AC, 8xt0:SZ, 8xt2:SZ, 6ydp:AC, 6ydw:AC, 6zm5:AC, 6zm6:AC, 6zs9:AC, 6zsa:AC, 6zsb:AC, 6zsc:AC, 6zsd:AC, 6zse:AC, 6zsg:AC
3 7jgr:E 398 32 0.0909 0.0302 0.3750 0.56 7jgs:E, 7jk2:E, 7jk3:E, 7jk4:E, 7jk5:E, 7jk6:E
4 8fgw:C 1342 26 0.0985 0.0097 0.5000 0.78 8fh3:C
5 5van:A 861 49 0.1288 0.0197 0.3469 1.2 6nfj:A, 6nfj:D, 5vaq:A
6 7suk:NB 142 43 0.1136 0.1056 0.3488 3.4 7ajt:UC, 7d5s:5H, 7d5t:5H, 7d63:5H, 6ke6:5H, 6lqp:5H, 6lqq:5H, 6lqr:5H, 6lqs:5H, 6lqt:5H, 6lqu:5H, 6lqv:5H, 5wlc:NB, 7wtl:UC, 6zqa:UC, 6zqb:UC, 6zqc:UC, 6zqf:UC, 6zqg:UC
7 8xph:A 254 98 0.1742 0.0906 0.2347 3.9 8xph:B, 8xpk:A, 8xpk:B
8 5n0k:A 1034 53 0.1212 0.0155 0.3019 4.0 5n4l:A, 5n4l:B
9 8i9v:Cb 642 50 0.1212 0.0249 0.3200 5.7 8i9t:Cb, 8i9w:Cb, 8i9x:Cb
10 7nhk:d 206 61 0.1364 0.0874 0.2951 8.0 6o8w:c, 6o8x:c, 6o8y:c, 6o8z:c, 6o90:c, 7p7q:d, 7p7r:d, 7p7s:d, 7p7t:d, 7p7u:d, 6w6p:c, 6wua:c
11 3nks:A 465 58 0.1061 0.0301 0.2414 8.3 4ivm:B, 4ivo:B
12 4qo5:A 521 37 0.0909 0.0230 0.3243 10.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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