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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KNLSSFEKQQIEIRKQIEQLENEAVAEKKWSLKGEVKAKDRPEDALLTEELEFDRTAKPVPVITSEVTESLEDMIRRRIQ
DSNFDDLQRRTLFELSDVKSSKSLAEIYEDDYTALSEELQKAHSEISELYANLVYKLDVLSSVHFVPKPASTETPTISME
DAQPLYMSNASSLAPQEIYNVGKAEKDGEIRLKNGVAMSKEELTREDKNRLRRALKRKRSK

The query sequence (length=221) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7aju:CK 222 221 1.0000 0.9955 1.0000 2.33e-161 7d4i:5E, 7d5t:5E, 5wxm:V, 6zqd:CK, 6zqe:CK, 6zqf:CK, 6zqg:CK
2 7ajt:CK 207 227 0.9050 0.9662 0.8811 6.41e-138 7d5s:5E, 7d63:5E, 6ke6:5E, 6lqp:5E, 6lqq:5E, 6lqr:5E, 6lqs:5E, 6lqt:5E, 6lqu:5E, 6lqv:5E, 7suk:NA, 5wlc:NA, 6zqa:CK, 6zqb:CK, 6zqc:CK
3 7mqa:NA 295 201 0.3937 0.2949 0.4328 1.76e-42 7mq8:NA, 7mq9:NA
4 6rxt:CL 231 213 0.3620 0.3463 0.3756 2.71e-40 6rxu:CL, 6rxv:CL, 6rxx:CL, 6rxy:CL, 6rxz:CL
5 5oql:c 175 200 0.3213 0.4057 0.3550 1.26e-31
6 6kua:A 163 60 0.0769 0.1043 0.2833 1.1
7 8bdc:A 963 183 0.1855 0.0426 0.2240 1.8 8bdc:B, 8bdc:C, 8bdc:D
8 7znn:B 559 47 0.0588 0.0233 0.2766 2.1 7zn7:B
9 6o0z:A 1288 45 0.0633 0.0109 0.3111 3.1
10 5ij6:A 322 82 0.1041 0.0714 0.2805 6.3
11 6a9t:A 417 153 0.1719 0.0911 0.2484 6.6 6a9u:A, 6a9v:A
12 1ac0:A 108 39 0.0498 0.1019 0.2821 7.1 1acz:A
13 7s4u:A 1092 47 0.0633 0.0128 0.2979 8.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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