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BioLiP
>protein
KNLSSFEKQQIEIRKQIEQLENEAVAEKKWSLKGEVKAKDRPEDALLTEELEFDRTAKPVPVITSEVTESLEDMIRRRIQ
DSNFDDLQRRTL

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7ajt:CK 207 92 1.0000 0.4444 1.0000 3.76e-61 7d5s:5E, 7d63:5E, 6ke6:5E, 6lqp:5E, 6lqq:5E, 6lqr:5E, 6lqs:5E, 6lqt:5E, 6lqu:5E, 6lqv:5E, 7suk:NA, 5wlc:NA, 6zqa:CK, 6zqb:CK, 6zqc:CK
2 7aju:CK 222 92 1.0000 0.4144 1.0000 4.35e-61 7d4i:5E, 7d5t:5E, 5wxm:V, 6zqd:CK, 6zqe:CK, 6zqf:CK, 6zqg:CK
3 6rxt:CL 231 86 0.4674 0.1861 0.5000 1.41e-25 6rxu:CL, 6rxv:CL, 6rxx:CL, 6rxy:CL, 6rxz:CL
4 5oql:c 175 85 0.4674 0.2457 0.5059 1.71e-25
5 7mqa:NA 295 87 0.4565 0.1424 0.4828 9.69e-21 7mq8:NA, 7mq9:NA
6 6g0l:M 855 36 0.1739 0.0187 0.4444 2.9 7nkx:W, 5o9g:W
7 6ftx:W 878 36 0.1739 0.0182 0.4444 3.0 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
8 6zwm:E 1117 33 0.1413 0.0116 0.3939 3.3 7pe7:F, 7pe7:E, 7pe8:E, 7pe9:E, 6zwm:F, 6zwo:F
9 1z3h:A 925 57 0.1957 0.0195 0.3158 9.0
10 5cul:B 79 39 0.1196 0.1392 0.2821 9.6

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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