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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KNKTIEVYVDRATLPTIQQMTQIINENSNNKKLISWSRYPINDETLLESINGSFFKNRPELIKSLDSMILTNEIKKVIIN
GNTLWAVDVVNIIKSIEALGKKTEIELNFYDDGSAEYVRLYDFSRLPESEQEYKISLSKDNIQSSINGTQPFDNSIENIY
GFSQLYPTTYHMLRADIFETNLPLTSLKRVISNNIKQMKWDYFTTFNSQQKNKFYNFTGFNPEKIKEQYKASPHENFIFI
GTNSGTATAEQQIDILTEAKKPDSPIITNSIQGLDLFFKGHPSATYNQQIIDAHNMIEIYNKIPFEALIMTDALPDAVGG
MGSSVFFSLPNTVENKFIFYKSDTDIENNALIQVMIELNIVNRNDVKLISDLQ

The query sequence (length=373) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2zwi:B 373 373 1.0000 1.0000 1.0000 0.0 2zwi:A
2 2z4t:A 493 394 0.3727 0.2819 0.3528 1.62e-59
3 4r83:A 474 389 0.3512 0.2764 0.3368 1.10e-53 4r83:B, 4r83:C, 4r83:D, 4r84:A, 4r84:B, 4r84:C, 4r84:D, 4r9v:A
4 2ii6:A 393 392 0.3110 0.2952 0.2959 1.31e-35 2c84:A, 2ex1:A, 2ihj:A, 2ihk:A, 2ihz:A, 2iib:A, 2iiq:A, 2iiq:B, 2ilv:A, 2iy7:A, 2iy8:A, 3s44:A, 8sv2:A
5 4v3b:A 388 400 0.2895 0.2784 0.2700 4.63e-31 4v3c:A
6 2cin:A 435 66 0.0483 0.0414 0.2727 0.036 2cjd:A, 2cjg:A, 2cjh:A, 2jje:A, 2jjg:A, 2jjh:A
7 6uhh:A 206 58 0.0429 0.0777 0.2759 0.58 6uhh:B
8 7n4y:B 2455 43 0.0349 0.0053 0.3023 0.95 7n4y:A
9 7elh:B 1264 98 0.0751 0.0222 0.2857 2.1 1mwh:A, 1n1h:A, 1n35:A, 1n38:A, 1uon:A, 7yed:R, 7yfe:R
10 4rkc:A 398 43 0.0375 0.0352 0.3256 2.1 4rkc:B, 4rkd:A, 4rkd:B, 4rkd:C, 4rkd:D, 4rkd:E, 4rkd:F, 4rkd:G, 4rkd:H, 6t3v:A, 6zup:B, 6zup:A, 6zur:B, 6zur:A, 6zvg:A, 6zvg:B, 6zvg:C, 6zvg:D
11 3j79:H 185 84 0.0643 0.1297 0.2857 2.2 3jbn:AH, 3jbo:AH, 3jbp:AH, 8tpu:AH, 5umd:H
12 6jiy:A 3521 58 0.0429 0.0045 0.2759 2.2 6ji8:A, 6ji8:D, 6ji8:G, 6ji8:J, 6jii:B, 6jii:E, 6jii:H, 6jii:K, 6jiu:A, 6jiu:D, 6jiu:G, 6jiu:J, 6jiy:D, 6jiy:G, 6jiy:J, 6jv2:A, 6jv2:C, 6jv2:E, 6jv2:G
13 5go9:A 3423 58 0.0429 0.0047 0.2759 2.3 5go9:B, 5go9:C, 5go9:D, 5goa:A, 5goa:B, 5goa:C, 5goa:D
14 6jgz:B 3485 58 0.0429 0.0046 0.2759 2.3 6jg3:A, 6jg3:B, 6jg3:C, 6jg3:D, 6jgz:D, 6jgz:F, 6jgz:H, 6jh6:B, 6jh6:D, 6jh6:F, 6jh6:H, 6jhn:A, 6jhn:C, 6jhn:E, 6jhn:G, 6ji0:A, 6ji0:C, 6ji0:E, 6ji0:G, 6jrr:A, 6jrr:C, 6jrr:E, 6jrr:G
15 6jrs:A 3488 58 0.0429 0.0046 0.2759 2.3 6jrs:D, 6jrs:G, 6jrs:J
16 8uxh:A 4004 58 0.0429 0.0040 0.2759 2.5 8uxh:B, 8uxh:C, 8uxh:D, 8uxi:A, 8uxi:B, 8uxi:C, 8uxi:D
17 8uxl:A 4232 58 0.0429 0.0038 0.2759 2.5 7u9q:A, 7u9q:D, 7u9q:B, 7u9q:C, 7u9r:A, 7u9r:D, 7u9r:B, 7u9r:C, 7u9t:A, 7u9t:D, 7u9t:B, 7u9t:C, 7u9x:A, 7u9x:B, 7u9x:C, 7u9x:D, 7u9z:A, 7u9z:B, 7u9z:C, 7u9z:D, 7ua1:A, 7ua1:B, 7ua1:C, 7ua1:D, 7ua5:A, 7ua5:B, 7ua5:C, 7ua5:D, 7ua9:A, 7ua9:B, 7ua9:C, 7ua9:D, 8uq2:A, 8uq2:B, 8uq2:C, 8uq2:D, 8uq3:A, 8uq3:B, 8uq3:C, 8uq3:D, 8uq4:A, 8uq4:B, 8uq4:C, 8uq4:D, 8uq5:A, 8uq5:B, 8uq5:C, 8uq5:D, 8uxc:A, 8uxc:B, 8uxc:C, 8uxc:D, 8uxe:A, 8uxe:B, 8uxe:C, 8uxe:D, 8uxf:A, 8uxf:B, 8uxf:C, 8uxf:D, 8uxg:A, 8uxg:B, 8uxg:C, 8uxg:D, 8uxl:B, 8uxl:C, 8uxl:D, 8uxm:A, 8uxm:B, 8uxm:C, 8uxm:D
18 7ua3:A 4443 34 0.0295 0.0025 0.3235 2.6 7ua3:B, 7ua3:C, 7ua3:D, 7ua4:A, 7ua4:B, 7ua4:C, 7ua4:D
19 2ozg:A 388 52 0.0402 0.0387 0.2885 3.6
20 6p78:A 230 77 0.0724 0.1174 0.3506 4.2
21 5mji:A 252 43 0.0375 0.0556 0.3256 4.9 5mld:A, 5mld:B, 5mld:C, 5mld:D, 5mld:E, 5mld:F, 5mld:G, 5mld:H
22 5wsz:A 169 93 0.0670 0.1479 0.2688 6.3 5wsz:B, 5wsz:C, 5wsz:D
23 7aqq:z 233 74 0.0456 0.0730 0.2297 9.3 7a23:q, 7a23:p, 7a24:q, 7a24:p, 7ar7:z, 7ar8:z, 7arb:z, 8bef:z, 8bpx:z, 8bq5:z, 8bq6:z
24 7vml:A 4044 58 0.0402 0.0037 0.2586 9.5 7aih:UA, 7am2:UA, 7ane:UA, 5dat:l1, 5gak:r, 6hd7:r, 6j3z:19, 6j40:19, 6j40:39, 5mc6:AZ, 6n8k:s, 6n8l:s, 6n8m:S, 6n8n:S, 6n8o:S, 7nrc:Lt, 6o1o:F, 6o1o:G, 6o1o:H, 6qik:p, 6qtz:p, 6ri5:p, 7rr5:L1, 6rzz:p, 6s05:p, 5t62:S, 5t6r:S, 6tnu:BT, 7vml:B, 7vml:C, 7vml:D, 7vmm:A, 7vmm:B, 7vmm:C, 7vmm:D, 7vmn:A, 7vmn:B, 7vmn:C, 7vmn:D, 7vmo:A, 7vmo:B, 7vmo:C, 7vmo:D, 7vmp:A, 7vmp:B, 7vmp:C, 7vmp:D, 7vmq:A, 7vmq:B, 7vmq:C, 7vmq:D, 7vmr:A, 7vmr:B, 7vmr:C, 7vmr:D, 7vms:A, 7vms:B, 7vms:C, 7vms:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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