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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
KNKNSRLAQAWFNTHRELLESNFTLVGDDGTNKEATSTGKLNQENEHIYNLWCSGRVCCEGMLIQLRFLKRQDLLNVLAR
MMRPVSDQVQIKVTMNDEDMDTYVFAVGTRKALVRLQKEMQDLSEFKYGLPDSLAILSEMGEVTDGMMDTKMVHFLTHYA
DKIESVHFSDQKRTLLFTFNVPGSGNTYPKDMEALLPLMNMVIYSIDKAKKFRLNREGKQKADKNRARVEENFLKLTHVQ
RQEAAQSRREEKKRAEKERIMNEEDPEKQRRLEEAALRREQKKLEKKQMK

The query sequence (length=290) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6w6l:7 290 290 1.0000 1.0000 1.0000 0.0
2 7tm3:4 342 318 0.9966 0.8450 0.9088 0.0 7tut:4
3 4r21:B 423 113 0.1172 0.0804 0.3009 0.59 4r20:A, 4r20:B, 4r21:A
4 2xwb:F 714 73 0.0724 0.0294 0.2877 3.7 3hrz:D, 3hs0:D, 3hs0:I, 7jtn:A, 7jtn:C, 7jtq:A, 7jtq:C, 7noz:F, 2ok5:A, 1q0p:A, 6qsw:AAA, 6qsw:BBB, 6qsw:CCC, 6qsx:AAA, 6qsx:BBB, 6rav:AAA, 6rav:BBB, 1rrk:A, 1rs0:A, 1rtk:A, 6rur:L, 6rur:J, 6ruv:J, 6ruv:L, 6t8u:AAA, 6t8u:BBB, 6t8u:CCC, 6t8v:AAA, 6t8v:BBB, 6t8w:AAA, 6t8w:BBB, 2win:I, 2win:J, 2win:K, 2win:L, 2xwb:H
5 6tmf:F 241 55 0.0586 0.0705 0.3091 4.8
6 8tj5:0 1246 103 0.1069 0.0249 0.3010 7.2 8tj5:Y

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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