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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
KNFLNIEELKRFLNGQTVVSIQPVTGSPLDKTDFIVAMAIAVEQAGAKALRIEGVSNVAAVSAAVTIPIIGIVKRDLPDS
PVRITPFVSDVDGLANAGATVIAFDATNRTRPESRERIAQAIKNTGCFAMADCSTFEDGLWANSQGVEIVGSTLSGYVGD
IEPTVPDFQLVKAFSEAGFFTMAEGRYNTPELAAKAIESGAVAVTVGSALTRLEVVTQWFNNATQAAGER

The query sequence (length=230) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5zjp:B 230 230 1.0000 1.0000 1.0000 3.07e-168 5zjn:A, 5zjn:B, 5zjp:A
2 3igs:A 230 224 0.5087 0.5087 0.5223 2.99e-72
3 4utu:A 229 214 0.3478 0.3493 0.3738 6.17e-41 4utu:B, 4utw:A, 4utw:B, 4utw:C, 4utw:D
4 7mfs:BBB 222 210 0.2913 0.3018 0.3190 1.10e-24 7mfs:AAA, 7mqt:AAA, 7mqt:BBB
5 3kvn:X 628 119 0.1348 0.0494 0.2605 0.013 3kvn:A
6 2v5h:B 289 74 0.1000 0.0796 0.3108 0.15 2jj4:A, 2jj4:B, 2v5h:A, 2v5h:C, 2v5h:D, 2v5h:E, 2v5h:F
7 3e2t:A 307 41 0.0652 0.0489 0.3659 1.6 8cji:A, 8cjj:A, 8cjk:A, 8cjl:A, 8cjm:A, 8cjn:A, 8cjo:A, 3hf6:A, 3hf8:A, 3hfb:A, 5j6d:A, 5l01:A, 1mlw:A, 7zif:A, 7zig:A, 7zih:A, 7zii:A, 7zij:A, 7zik:A, 7zik:B
8 6zvp:D 458 44 0.0652 0.0328 0.3409 2.0 7a2g:A, 7a2g:B, 7a2g:C, 7a2g:D, 7pim:B, 7pim:A, 7pim:D, 7pim:F, 1toh:A, 2toh:A, 2xsn:A, 2xsn:B, 2xsn:C, 2xsn:D, 6zn2:A, 6zn2:C, 6zn2:E, 6zn2:G, 6zvp:A, 6zvp:B, 6zvp:C, 6zzu:B, 6zzu:A, 6zzu:C, 6zzu:D
9 1m3u:A 262 63 0.0870 0.0763 0.3175 3.6 1m3u:B, 1m3u:C, 1m3u:D, 1m3u:E, 1m3u:F, 1m3u:G, 1m3u:H, 1m3u:I, 1m3u:J
10 6r5k:H 394 27 0.0565 0.0330 0.4815 4.5 6r5k:D, 6r5k:F
11 3ih0:A 304 61 0.0826 0.0625 0.3115 7.6 3gbu:A, 3gbu:B, 3gbu:C, 3gbu:D
12 1oy0:B 248 48 0.0826 0.0766 0.3958 9.0 1oy0:C, 1oy0:D, 1oy0:E

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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